Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48496 * 109.46925 * 239.99905 * 3 2 1 5 5 H 1.48502 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46896 * 120.00158 * 3 2 1 7 7 C 1.40304 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.40069 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.35033 * 120.00373 * 188.90931 * 9 7 2 11 11 C 1.50704 * 119.99722 * 6.40818 * 10 9 7 12 12 C 1.52991 * 109.47392 * 126.18556 * 11 10 9 13 13 H 1.08999 * 109.52529 * 54.87423 * 12 11 10 14 14 C 1.53188 * 109.52150 * 174.99697 * 12 11 10 15 15 C 1.53175 * 109.03303 * 176.88604 * 14 12 11 16 16 C 1.53090 * 109.16453 * 303.01681 * 15 14 12 17 17 O 1.42902 * 109.41067 * 57.61576 * 16 15 14 18 18 C 1.42903 * 114.09657 * 298.83254 * 17 16 15 19 19 H 0.96997 * 120.00438 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.00174 * 8.91623 * 9 7 2 21 21 H 1.07993 * 120.00360 * 186.39399 * 10 9 7 22 22 H 1.09001 * 109.46445 * 246.18675 * 11 10 9 23 23 H 1.09003 * 109.47258 * 6.17927 * 11 10 9 24 24 H 1.09002 * 109.54146 * 296.75744 * 14 12 11 25 25 H 1.09004 * 109.54153 * 57.02012 * 14 12 11 26 26 H 1.08997 * 109.52222 * 62.93030 * 15 14 12 27 27 H 1.09005 * 109.51460 * 183.05295 * 15 14 12 28 28 H 1.08996 * 109.47633 * 177.59499 * 16 15 14 29 29 H 1.08994 * 109.48444 * 297.61868 * 16 15 14 30 30 H 1.08995 * 109.48456 * 301.18309 * 18 17 16 31 31 H 1.09000 * 109.47612 * 181.14204 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0946 1.6965 1.2125 7 6 2.0085 -1.2150 -0.0005 8 1 3.0885 -1.2150 -0.0010 9 6 1.3082 -2.4281 -0.0005 10 6 1.9712 -3.5905 0.1800 11 6 3.4382 -3.5755 0.5249 12 6 3.6724 -4.3978 1.7936 13 1 3.2668 -5.4004 1.6579 14 6 5.1754 -4.4875 2.0753 15 6 5.3932 -5.2457 3.3883 16 6 4.6330 -4.5349 4.5111 17 8 3.2470 -4.4582 4.1717 18 6 2.9787 -3.7198 2.9780 19 1 -0.4851 0.8400 -0.0004 20 1 0.2379 -2.4338 -0.1451 21 1 1.4503 -4.5309 0.0776 22 1 4.0091 -4.0060 -0.2978 23 1 3.7615 -2.5481 0.6929 24 1 5.6679 -5.0191 1.2611 25 1 5.5909 -3.4833 2.1609 26 1 5.0222 -6.2654 3.2859 27 1 6.4572 -5.2671 3.6243 28 1 4.7495 -5.0941 5.4394 29 1 5.0321 -3.5289 4.6402 30 1 3.3560 -2.7031 3.0869 31 1 1.9034 -3.6918 2.8020 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -82.274323 kcal Electronic energy + Delta-G solvation = -12456.445500 eV Core-core repulsion = 10315.121239 eV Total energy + Delta-G solvation = -2141.324262 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29056 -36.89722 -35.30263 -33.69250 -31.86462 -28.11770 -26.12572 -25.80394 -23.07307 -20.97276 -20.57206 -18.21048 -17.12033 -16.89147 -16.59222 -15.77370 -15.29257 -15.10740 -14.83482 -14.14160 -13.47862 -13.29146 -13.11924 -12.94112 -12.84658 -12.47905 -12.02107 -11.88389 -11.81791 -11.37572 -11.18691 -11.14700 -10.78471 -10.31974 -9.57304 -8.66813 -6.28658 1.27047 1.36837 1.49105 1.97260 2.21658 3.03547 3.39665 3.95205 3.97720 4.04370 4.12990 4.38109 4.60372 4.65009 4.74444 4.86846 4.91998 5.04297 5.10164 5.13832 5.16185 5.27722 5.31069 5.41282 5.44644 5.71622 5.93138 6.33958 6.39759 6.65918 7.09800 7.22189 8.39425 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.044158 B = 0.008784 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.930152 B = 3187.028601 C = 3322.398182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.489 4.489 8 H 0.080 0.920 9 C 0.022 3.978 10 C -0.412 4.412 11 C -0.030 4.030 12 C -0.105 4.105 13 H 0.058 0.942 14 C -0.118 4.118 15 C -0.148 4.148 16 C 0.049 3.951 17 O -0.409 6.409 18 C 0.081 3.919 19 H 0.288 0.712 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.037 0.963 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -3.384 5.999 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.097 0.903 9 C 0.001 3.999 10 C -0.433 4.433 11 C -0.067 4.067 12 C -0.124 4.124 13 H 0.076 0.924 14 C -0.155 4.155 15 C -0.185 4.185 16 C -0.027 4.027 17 O -0.328 6.328 18 C 0.005 3.995 19 H 0.098 0.902 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.900 -3.318 6.106 12.096 hybrid contribution -0.244 0.693 -0.447 0.860 sum 9.657 -2.625 5.659 11.496 Atomic orbital electron populations 1.69643 1.09307 1.30916 1.38851 1.27069 0.95600 1.05295 0.90817 0.85246 0.78712 0.75494 0.80255 1.18130 1.19289 1.18188 1.19826 0.94968 0.91345 1.45720 0.90254 1.19886 0.95108 0.93740 0.91122 1.22167 0.97070 0.94390 1.29718 1.19945 0.94044 0.98365 0.94365 1.21647 0.96198 0.99179 0.95377 0.92393 1.21688 0.94633 1.00907 0.98280 1.22162 1.01851 0.99750 0.94764 1.22823 0.80961 1.00391 0.98533 1.87861 1.26345 1.75335 1.43282 1.22390 1.00129 0.93343 0.83646 0.90153 0.93376 0.92294 0.94498 0.93075 0.90791 0.91957 0.91431 0.88440 0.87078 0.93044 0.94189 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.32 12.88 21.89 0.28 -47.03 16 2 C 0.02 1.30 5.50 85.37 0.47 1.77 16 3 Si 0.98 39.36 29.56 68.60 2.03 41.39 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.49 -27.04 8.48 23.22 0.20 -26.84 16 8 H 0.08 4.21 5.77 -2.91 -0.02 4.20 16 9 C 0.02 1.23 9.37 21.98 0.21 1.43 16 10 C -0.41 -21.09 8.72 24.95 0.22 -20.87 16 11 C -0.03 -1.31 4.89 29.85 0.15 -1.16 16 12 C -0.11 -3.90 2.38 -10.70 -0.03 -3.92 16 13 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.12 -3.38 5.31 30.72 0.16 -3.22 16 15 C -0.15 -3.48 6.14 30.68 0.19 -3.29 16 16 C 0.05 1.27 6.84 72.01 0.49 1.77 16 17 O -0.41 -14.57 10.77 -148.98 -1.60 -16.18 16 18 C 0.08 3.21 5.90 72.01 0.43 3.64 16 19 H 0.29 14.35 8.29 -92.71 -0.77 13.58 16 20 H 0.05 2.93 7.46 -2.91 -0.02 2.91 16 21 H 0.06 3.00 8.06 -2.91 -0.02 2.98 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 2.34 5.51 -2.39 -0.01 2.33 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 3.23 7.48 -2.39 -0.02 3.22 16 Total: -1.00 -59.79 253.91 4.27 -55.52 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.08 Total: 17.01 kcal Atomic # 6 Polarization: -53.18 SS G_CDS: 2.48 Total: -50.70 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.28 Total: -47.03 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.60 Total: -16.18 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -59.79 4.27 -55.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.759 kcal (2) G-P(sol) polarization free energy of solvation -59.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds