Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35039 * 1 3 3 C 1.40071 * 119.99823 * 2 1 4 4 H 1.07997 * 119.99768 * 153.68434 * 3 2 1 5 5 C 1.40311 * 120.00224 * 333.67960 * 3 2 1 6 6 N 1.30690 * 119.99621 * 344.90515 * 5 3 2 7 7 Si 1.86799 * 120.00172 * 164.90721 * 5 3 2 8 8 H 1.48489 * 109.47247 * 179.97438 * 7 5 3 9 9 H 1.48504 * 109.46925 * 299.99968 * 7 5 3 10 10 H 1.48498 * 109.47027 * 59.99700 * 7 5 3 11 11 C 1.50701 * 119.99970 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47103 * 95.00096 * 11 2 1 13 13 H 1.09005 * 109.52608 * 304.87147 * 12 11 2 14 14 C 1.53181 * 109.52388 * 184.68521 * 12 11 2 15 15 C 1.53171 * 109.04010 * 183.11349 * 14 12 11 16 16 C 1.53090 * 109.16339 * 56.97853 * 15 14 12 17 17 O 1.42906 * 109.41582 * 302.39187 * 16 15 14 18 18 C 1.42906 * 114.09589 * 61.15655 * 17 16 15 19 19 H 1.07994 * 119.99888 * 174.59977 * 1 2 3 20 20 H 1.07995 * 119.99996 * 354.60618 * 1 2 3 21 21 H 0.97008 * 119.99456 * 180.02562 * 6 5 3 22 22 H 1.08998 * 109.46775 * 215.00093 * 11 2 1 23 23 H 1.09000 * 109.46649 * 335.00062 * 11 2 1 24 24 H 1.08999 * 109.54225 * 302.98700 * 14 12 11 25 25 H 1.09002 * 109.54107 * 63.24342 * 14 12 11 26 26 H 1.09007 * 109.51949 * 297.07654 * 15 14 12 27 27 H 1.08990 * 109.57821 * 176.91826 * 15 14 12 28 28 H 1.08998 * 109.47852 * 182.41073 * 16 15 14 29 29 H 1.09003 * 109.48940 * 62.37988 * 16 15 14 30 30 H 1.08998 * 109.47813 * 178.85951 * 18 17 16 31 31 H 1.09000 * 109.48919 * 58.83182 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0467 1.2615 0.4146 5 6 1.4583 2.3652 -0.5388 6 7 0.3982 2.2617 -1.2961 7 14 2.1847 4.0470 -0.1736 8 1 1.3806 5.0923 -0.8561 9 1 2.1668 4.2862 1.2920 10 1 3.5844 4.0993 -0.6666 11 6 2.1039 -1.3051 -0.0006 12 6 2.4678 -1.6833 -1.4377 13 1 1.5651 -1.7049 -2.0485 14 6 3.1299 -3.0645 -1.4516 15 6 3.5596 -3.3983 -2.8835 16 6 4.4952 -2.3003 -3.3962 17 8 3.8287 -1.0380 -3.3277 18 6 3.4455 -0.6516 -2.0063 19 1 -0.5400 -0.9311 -0.0880 20 1 -0.5400 0.9311 0.0879 21 1 -0.0111 3.0582 -1.6689 22 1 3.0145 -1.1991 0.5889 23 1 1.4789 -2.0856 0.4334 24 1 4.0043 -3.0562 -0.8010 25 1 2.4195 -3.8129 -1.1003 26 1 2.6794 -3.4552 -3.5240 27 1 4.0808 -4.3554 -2.8946 28 1 4.7702 -2.5105 -4.4298 29 1 5.3936 -2.2709 -2.7797 30 1 2.9644 0.3259 -2.0387 31 1 4.3300 -0.6006 -1.3714 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -55.359294 kcal Electronic energy + Delta-G solvation = -12807.374317 eV Core-core repulsion = 10667.217179 eV Total energy + Delta-G solvation = -2140.157138 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.85991 -35.39194 -33.39380 -31.83193 -29.66038 -25.69283 -24.87638 -24.15357 -21.80703 -19.58559 -18.63039 -15.67024 -15.63021 -15.30425 -14.88183 -14.26383 -13.93363 -13.46248 -12.65075 -12.32204 -12.07503 -11.80617 -11.38628 -11.16260 -10.96174 -10.71654 -10.45453 -10.44823 -10.00248 -9.72710 -9.46450 -9.16258 -8.88877 -8.72836 -7.15193 -6.35317 -4.02830 3.15600 3.23756 3.27000 4.14411 4.24512 4.49769 5.18232 5.24284 5.27503 5.47271 5.58435 5.71466 5.92748 6.01647 6.12691 6.26107 6.31113 6.36467 6.55575 6.68637 6.81131 7.02243 7.14546 7.22251 7.43189 7.69451 7.84281 8.26593 8.54244 9.06421 9.31509 9.53785 10.63020 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.011219 C = 0.009856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.023630 B = 2495.236420 C = 2840.361301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 C 0.027 3.973 3 C -0.475 4.475 4 H 0.059 0.941 5 C 0.076 3.924 6 N -0.803 5.803 7 Si 0.891 3.109 8 H -0.283 1.283 9 H -0.269 1.269 10 H -0.270 1.270 11 C -0.071 4.071 12 C -0.104 4.104 13 H 0.074 0.926 14 C -0.119 4.119 15 C -0.154 4.154 16 C 0.059 3.941 17 O -0.388 6.388 18 C 0.067 3.933 19 H 0.037 0.963 20 H 0.089 0.911 21 H 0.270 0.730 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.125 0.875 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -6.550 -2.016 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.381 4.381 2 C 0.026 3.974 3 C -0.507 4.507 4 H 0.078 0.922 5 C -0.139 4.139 6 N -0.430 5.430 7 Si 0.717 3.283 8 H -0.208 1.208 9 H -0.194 1.194 10 H -0.195 1.195 11 C -0.109 4.109 12 C -0.122 4.122 13 H 0.092 0.908 14 C -0.157 4.157 15 C -0.192 4.192 16 C -0.018 4.018 17 O -0.307 6.307 18 C -0.008 4.008 19 H 0.056 0.944 20 H 0.107 0.893 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.063 -6.305 -2.322 9.050 hybrid contribution 0.297 0.613 0.353 0.767 sum 6.359 -5.692 -1.969 8.759 Atomic orbital electron populations 1.23346 0.94719 0.97386 1.22689 1.18344 0.93191 0.90849 0.95044 1.19006 1.01431 0.93336 1.36904 0.92241 1.25712 0.94666 1.00164 0.93328 1.69825 1.18921 1.30153 1.24098 0.86668 0.79688 0.82554 0.79396 1.20809 1.19441 1.19474 1.20616 0.98906 0.97531 0.93819 1.21604 0.99020 0.93344 0.98271 0.90795 1.21713 1.00256 0.98041 0.95669 1.22176 1.00558 0.98545 0.97908 1.22463 0.94003 0.84732 1.00612 1.87956 1.77245 1.35378 1.30144 1.22951 0.96191 1.00150 0.81531 0.94409 0.89291 0.91869 0.93426 0.93690 0.92420 0.92160 0.91366 0.91847 0.89971 0.93992 0.85682 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.46 12.91 29.60 0.38 -9.08 16 2 C 0.03 0.71 4.65 -105.07 -0.49 0.23 16 3 C -0.47 -12.82 6.97 -38.12 -0.27 -13.09 16 4 H 0.06 1.55 7.90 -52.49 -0.41 1.14 16 5 C 0.08 2.03 5.13 -17.26 -0.09 1.95 16 6 N -0.80 -22.42 10.99 55.57 0.61 -21.81 16 7 Si 0.89 20.11 29.59 -169.99 -5.03 15.08 16 8 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 11 C -0.07 -1.56 4.86 -27.88 -0.14 -1.69 16 12 C -0.10 -2.09 2.38 -90.48 -0.22 -2.31 16 13 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 14 C -0.12 -1.92 5.31 -26.55 -0.14 -2.06 16 15 C -0.15 -2.21 6.14 -26.60 -0.16 -2.37 16 16 C 0.06 0.90 6.84 37.20 0.25 1.16 16 17 O -0.39 -7.72 10.77 -35.23 -0.38 -8.10 16 18 C 0.07 1.41 5.58 37.20 0.21 1.62 16 19 H 0.04 0.99 8.06 -52.49 -0.42 0.57 16 20 H 0.09 2.65 6.26 -52.49 -0.33 2.32 16 21 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 22 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 23 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.13 3.07 6.18 -51.93 -0.32 2.75 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 251.42 15.07 3.79 3.79 Total: -1.00 -28.49 251.42 -6.51 -35.00 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.84 Total: 1.70 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -0.65 Total: -25.65 kcal Atomic # 7 Polarization: -22.42 SS G_CDS: 0.61 Total: -21.81 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.38 Total: -8.10 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.49 -6.51 -35.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.361 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds