Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46691 * 300.00002 * 3 2 1 6 6 H 1.48497 * 109.46761 * 59.99802 * 3 2 1 7 7 C 1.40306 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.40075 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.35035 * 120.00041 * 172.79401 * 9 7 2 11 11 C 1.50701 * 119.99976 * 355.96943 * 10 9 7 12 12 C 1.53004 * 109.47040 * 125.56695 * 11 10 9 13 13 H 1.09000 * 109.47631 * 304.99550 * 12 11 10 14 14 C 1.53084 * 109.48071 * 184.97720 * 12 11 10 15 15 C 1.53175 * 109.16377 * 182.40839 * 14 12 11 16 16 C 1.53176 * 109.03738 * 56.97883 * 15 14 12 17 17 C 1.53091 * 109.16346 * 303.02171 * 16 15 14 18 18 O 1.42898 * 109.48012 * 65.02095 * 12 11 10 19 19 H 0.97006 * 119.99998 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99744 * 353.07780 * 9 7 2 21 21 H 1.07997 * 119.99572 * 175.96320 * 10 9 7 22 22 H 1.08993 * 109.46889 * 245.56646 * 11 10 9 23 23 H 1.08999 * 109.47195 * 5.56739 * 11 10 9 24 24 H 1.09007 * 109.52038 * 302.31455 * 14 12 11 25 25 H 1.09001 * 109.52626 * 62.49932 * 14 12 11 26 26 H 1.09000 * 109.54479 * 176.84617 * 15 14 12 27 27 H 1.09000 * 109.54179 * 297.10702 * 15 14 12 28 28 H 1.08999 * 109.52382 * 62.92661 * 16 15 14 29 29 H 1.09001 * 109.51940 * 183.11424 * 16 15 14 30 30 H 1.08994 * 109.48192 * 177.59060 * 17 16 15 31 31 H 1.08998 * 109.47541 * 297.61504 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9752 -3.5930 -0.1478 11 6 3.4605 -3.5836 -0.4028 12 6 4.1631 -4.4514 0.6432 13 1 3.8915 -4.1085 1.6416 14 6 5.6792 -4.3433 0.4612 15 6 6.3737 -5.2608 1.4723 16 6 5.8656 -6.6928 1.2787 17 6 4.3422 -6.7101 1.4292 18 8 3.7608 -5.8129 0.4809 19 1 -0.4850 0.8401 0.0004 20 1 0.2340 -2.4316 0.1126 21 1 1.4444 -4.5312 -0.0826 22 1 3.6607 -3.9805 -1.3980 23 1 3.8339 -2.5616 -0.3373 24 1 5.9472 -4.6474 -0.5507 25 1 5.9937 -3.3131 0.6282 26 1 7.4513 -5.2314 1.3112 27 1 6.1458 -4.9266 2.4844 28 1 6.1373 -7.0444 0.2834 29 1 6.3133 -7.3428 2.0305 30 1 3.9707 -7.7190 1.2501 31 1 4.0730 -6.3973 2.4380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = -63.831046 kcal Electronic energy + Delta-G solvation = -12323.113030 eV Core-core repulsion = 10182.588529 eV Total energy + Delta-G solvation = -2140.524501 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.87076 -34.63608 -33.21615 -32.66346 -30.39267 -26.87840 -24.69958 -23.54582 -21.53775 -19.83810 -18.55575 -16.22534 -15.72805 -15.47869 -14.72772 -14.25615 -14.13216 -13.41013 -12.87009 -12.52443 -12.31504 -11.99062 -11.40576 -11.28156 -11.04153 -10.82655 -10.59427 -10.42808 -10.13915 -9.93088 -9.52226 -9.38410 -8.98851 -8.66050 -7.48292 -6.64492 -4.14743 2.99052 3.13479 3.19246 3.98766 4.04780 4.40961 5.03028 5.07249 5.14389 5.38825 5.54539 5.60568 5.74856 5.88163 5.99227 6.11434 6.16278 6.18744 6.29503 6.53525 6.59681 6.85918 7.16439 7.27468 7.38914 7.72080 7.93183 7.99822 8.53323 8.79012 9.23658 9.37846 10.39913 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.056390 B = 0.007864 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.421511 B = 3559.472027 C = 3925.474347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.407 4.407 11 C -0.035 4.035 12 C 0.096 3.904 13 H 0.052 0.948 14 C -0.153 4.153 15 C -0.122 4.122 16 C -0.154 4.154 17 C 0.058 3.942 18 O -0.371 6.371 19 H 0.278 0.722 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.034 0.966 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -6.046 2.790 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.024 3.976 10 C -0.429 4.429 11 C -0.071 4.071 12 C 0.039 3.961 13 H 0.070 0.930 14 C -0.191 4.191 15 C -0.159 4.159 16 C -0.192 4.192 17 C -0.019 4.019 18 O -0.290 6.290 19 H 0.088 0.912 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.286 -5.931 2.644 11.331 hybrid contribution 0.522 0.830 0.289 1.023 sum 9.808 -5.100 2.934 11.437 Atomic orbital electron populations 1.69589 1.07649 1.29026 1.39163 1.26098 0.94749 1.01537 0.91991 0.86291 0.80854 0.81298 0.78350 1.18513 1.20030 1.20067 1.19706 0.94669 0.90778 1.44627 0.90646 1.19907 0.96399 0.92210 0.89049 1.21901 0.93778 0.95539 1.31730 1.20129 0.95636 0.96855 0.94518 1.22407 0.91222 0.81868 1.00610 0.93024 1.22293 0.97561 0.99770 0.99464 1.21590 0.99550 0.95141 0.99665 1.22182 0.97564 0.97311 1.02155 1.22452 0.91924 0.94412 0.93139 1.88012 1.68849 1.17875 1.54262 0.91185 0.90494 0.91379 0.94779 0.90597 0.91598 0.91189 0.92231 0.92121 0.91450 0.91718 0.89821 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.72 12.88 55.57 0.72 -22.00 16 2 C 0.07 1.90 5.50 -17.26 -0.09 1.80 16 3 Si 0.91 19.61 29.56 -169.99 -5.03 14.59 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.47 -12.97 8.62 -38.12 -0.33 -13.30 16 8 H 0.08 2.02 5.51 -52.48 -0.29 1.73 16 9 C 0.04 1.26 9.38 -40.03 -0.38 0.88 16 10 C -0.41 -10.75 9.45 -35.45 -0.34 -11.09 16 11 C -0.03 -0.80 5.20 -27.88 -0.14 -0.94 16 12 C 0.10 1.91 2.63 -26.69 -0.07 1.84 16 13 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.15 -2.46 5.42 -26.60 -0.14 -2.61 16 15 C -0.12 -1.63 6.03 -26.55 -0.16 -1.79 16 16 C -0.15 -1.98 6.14 -26.59 -0.16 -2.14 16 17 C 0.06 0.87 6.84 37.20 0.25 1.13 16 18 O -0.37 -7.35 10.16 -35.23 -0.36 -7.71 16 19 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 20 H 0.08 2.27 7.44 -52.49 -0.39 1.88 16 21 H 0.07 1.82 8.06 -52.49 -0.42 1.40 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.77 5.31 -51.93 -0.28 1.50 16 24 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 255.15 15.07 3.85 3.85 Total: -1.00 -28.78 255.15 -7.12 -35.91 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.74 Total: 1.59 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -1.56 Total: -26.22 kcal Atomic # 7 Polarization: -22.72 SS G_CDS: 0.72 Total: -22.00 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.36 Total: -7.71 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.78 -7.12 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.925 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds