Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46691 * 300.00002 * 3 2 1 6 6 H 1.48497 * 109.46761 * 59.99802 * 3 2 1 7 7 C 1.40306 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.40075 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.35035 * 120.00041 * 172.79401 * 9 7 2 11 11 C 1.50701 * 119.99976 * 355.96943 * 10 9 7 12 12 C 1.53004 * 109.47040 * 125.56695 * 11 10 9 13 13 H 1.09000 * 109.47631 * 304.99550 * 12 11 10 14 14 C 1.53084 * 109.48071 * 184.97720 * 12 11 10 15 15 C 1.53175 * 109.16377 * 182.40839 * 14 12 11 16 16 C 1.53176 * 109.03738 * 56.97883 * 15 14 12 17 17 C 1.53091 * 109.16346 * 303.02171 * 16 15 14 18 18 O 1.42898 * 109.48012 * 65.02095 * 12 11 10 19 19 H 0.97006 * 119.99998 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99744 * 353.07780 * 9 7 2 21 21 H 1.07997 * 119.99572 * 175.96320 * 10 9 7 22 22 H 1.08993 * 109.46889 * 245.56646 * 11 10 9 23 23 H 1.08999 * 109.47195 * 5.56739 * 11 10 9 24 24 H 1.09007 * 109.52038 * 302.31455 * 14 12 11 25 25 H 1.09001 * 109.52626 * 62.49932 * 14 12 11 26 26 H 1.09000 * 109.54479 * 176.84617 * 15 14 12 27 27 H 1.09000 * 109.54179 * 297.10702 * 15 14 12 28 28 H 1.08999 * 109.52382 * 62.92661 * 16 15 14 29 29 H 1.09001 * 109.51940 * 183.11424 * 16 15 14 30 30 H 1.08994 * 109.48192 * 177.59060 * 17 16 15 31 31 H 1.08998 * 109.47541 * 297.61504 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9752 -3.5930 -0.1478 11 6 3.4605 -3.5836 -0.4028 12 6 4.1631 -4.4514 0.6432 13 1 3.8915 -4.1085 1.6416 14 6 5.6792 -4.3433 0.4612 15 6 6.3737 -5.2608 1.4723 16 6 5.8656 -6.6928 1.2787 17 6 4.3422 -6.7101 1.4292 18 8 3.7608 -5.8129 0.4809 19 1 -0.4850 0.8401 0.0004 20 1 0.2340 -2.4316 0.1126 21 1 1.4444 -4.5312 -0.0826 22 1 3.6607 -3.9805 -1.3980 23 1 3.8339 -2.5616 -0.3373 24 1 5.9472 -4.6474 -0.5507 25 1 5.9937 -3.3131 0.6282 26 1 7.4513 -5.2314 1.3112 27 1 6.1458 -4.9266 2.4844 28 1 6.1373 -7.0444 0.2834 29 1 6.3133 -7.3428 2.0305 30 1 3.9707 -7.7190 1.2501 31 1 4.0730 -6.3973 2.4380 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = -80.533712 kcal Electronic energy + Delta-G solvation = -12323.837312 eV Core-core repulsion = 10182.588529 eV Total energy + Delta-G solvation = -2141.248783 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24050 -36.64900 -34.52529 -34.44282 -32.07210 -28.59000 -26.52643 -24.91647 -23.06502 -21.10137 -20.60214 -18.30312 -17.20737 -16.78514 -16.53467 -15.63623 -15.41179 -15.08962 -14.57206 -14.14037 -13.60087 -13.36406 -13.33054 -13.01613 -12.54753 -12.19914 -12.05493 -11.89165 -11.78869 -11.43088 -11.37088 -11.14969 -10.92641 -10.19901 -9.61809 -8.66768 -6.28900 1.25052 1.38197 1.54689 1.96895 2.23021 3.03622 3.40316 3.94521 3.97109 4.02059 4.14623 4.34445 4.55299 4.62644 4.74765 4.77089 4.90091 4.99370 5.04005 5.12706 5.20866 5.23672 5.31610 5.35206 5.47868 5.63796 5.89020 6.35609 6.55286 6.65620 7.09006 7.20736 8.40377 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.056390 B = 0.007864 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.421511 B = 3559.472027 C = 3925.474347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.018 3.982 10 C -0.406 4.406 11 C -0.032 4.032 12 C 0.101 3.899 13 H 0.035 0.965 14 C -0.148 4.148 15 C -0.120 4.120 16 C -0.148 4.148 17 C 0.047 3.953 18 O -0.402 6.402 19 H 0.289 0.711 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -5.632 3.209 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.189 4.189 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.101 0.899 9 C -0.002 4.002 10 C -0.428 4.428 11 C -0.069 4.069 12 C 0.044 3.956 13 H 0.053 0.947 14 C -0.186 4.186 15 C -0.157 4.157 16 C -0.186 4.186 17 C -0.030 4.030 18 O -0.322 6.322 19 H 0.099 0.901 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.637 -5.547 3.068 13.252 hybrid contribution -0.322 0.586 0.162 0.688 sum 11.315 -4.961 3.231 12.770 Atomic orbital electron populations 1.69663 1.09431 1.30863 1.39018 1.27127 0.95644 1.05459 0.90679 0.85070 0.79442 0.75679 0.78964 1.17625 1.18943 1.18857 1.19928 0.95146 0.91308 1.45915 0.89882 1.19943 0.95317 0.93758 0.91202 1.22088 0.95911 0.94290 1.30489 1.20062 0.93455 0.97630 0.95758 1.22136 0.93552 0.81749 0.98187 0.94651 1.22215 0.94633 1.01088 1.00661 1.21613 1.00743 0.94630 0.98750 1.22152 0.95502 0.97614 1.03303 1.22776 0.93862 0.94138 0.92206 1.87944 1.70257 1.18074 1.55938 0.90115 0.93178 0.92650 0.94712 0.91069 0.91422 0.90654 0.89614 0.91859 0.91316 0.88655 0.88070 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.02 12.88 21.89 0.28 -47.74 16 2 C 0.02 1.22 5.50 85.37 0.47 1.69 16 3 Si 0.99 39.53 29.56 68.60 2.03 41.56 16 4 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.49 -27.89 8.62 23.22 0.20 -27.69 16 8 H 0.08 4.47 5.51 -2.91 -0.02 4.46 16 9 C 0.02 1.06 9.38 21.98 0.21 1.26 16 10 C -0.41 -22.23 9.45 24.95 0.24 -22.00 16 11 C -0.03 -1.51 5.20 29.85 0.16 -1.35 16 12 C 0.10 3.99 2.63 30.62 0.08 4.07 16 13 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 14 C -0.15 -4.50 5.42 30.68 0.17 -4.33 16 15 C -0.12 -2.83 6.03 30.71 0.19 -2.64 16 16 C -0.15 -3.31 6.14 30.68 0.19 -3.13 16 17 C 0.05 1.32 6.84 72.01 0.49 1.82 16 18 O -0.40 -15.82 10.16 -148.98 -1.51 -17.33 16 19 H 0.29 14.39 8.29 -92.70 -0.77 13.62 16 20 H 0.05 3.14 7.44 -2.91 -0.02 3.12 16 21 H 0.06 3.10 8.06 -2.91 -0.02 3.07 16 22 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 3.36 5.31 -2.39 -0.01 3.34 16 24 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -63.19 255.15 4.26 -58.93 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.08 Total: 16.88 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 2.38 Total: -52.29 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.28 Total: -47.74 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.51 Total: -17.33 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -63.19 4.26 -58.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.606 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds