Wall clock time and date at job start Mon Mar 30 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35350 * 126.90826 * 2 1 4 4 C 1.50700 * 126.75528 * 0.08509 * 3 2 1 5 5 H 1.08997 * 109.46987 * 14.98050 * 4 3 2 6 6 N 1.46907 * 109.47145 * 134.97916 * 4 3 2 7 7 C 1.50702 * 109.47067 * 254.97734 * 4 3 2 8 8 H 1.07997 * 119.99604 * 0.02562 * 7 4 3 9 9 C 1.37873 * 119.99831 * 179.97438 * 7 4 3 10 10 N 1.31515 * 120.00149 * 0.02562 * 9 7 4 11 11 Si 1.86797 * 119.99763 * 180.02562 * 9 7 4 12 12 H 1.48501 * 109.47409 * 59.99983 * 11 9 7 13 13 H 1.48506 * 109.47234 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46995 * 299.99925 * 11 9 7 15 15 N 1.33771 * 106.49501 * 180.02562 * 3 2 1 16 16 N 1.28634 * 108.88748 * 0.02562 * 15 3 2 17 17 N 1.28719 * 110.17554 * 359.97438 * 16 15 3 18 18 C 1.46504 * 125.86767 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.47418 * 89.99621 * 1 2 3 20 20 H 1.09001 * 109.47294 * 209.99597 * 1 2 3 21 21 H 1.09000 * 109.47387 * 329.99910 * 1 2 3 22 22 H 1.00901 * 110.99689 * 296.04486 * 6 4 3 23 23 H 1.00896 * 110.99587 * 60.00104 * 6 4 3 24 24 H 0.96999 * 119.99752 * 180.02562 * 10 9 7 25 25 H 1.08992 * 109.47315 * 90.02422 * 18 17 16 26 26 H 1.09001 * 109.46739 * 210.02679 * 18 17 16 27 27 H 1.08998 * 109.47011 * 330.02203 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3198 1.0823 0.0000 4 6 1.8959 2.5284 0.0018 5 1 0.8414 2.5976 0.2687 6 7 2.6989 3.2728 0.9812 7 6 2.1064 3.1153 -1.3702 8 1 2.5067 2.5022 -2.1641 9 6 1.7870 4.4345 -1.6121 10 7 1.2991 5.1809 -0.6454 11 14 2.0473 5.1617 -3.3129 12 1 1.2357 4.4088 -4.3027 13 1 1.6297 6.5869 -3.3112 14 1 3.4840 5.0679 -3.6768 15 7 3.5735 0.6157 -0.0006 16 7 3.5393 -0.6702 -0.0015 17 7 2.3197 -1.0818 -0.0009 18 6 1.8860 -2.4812 -0.0022 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 2.5260 2.9402 1.9180 23 1 3.6810 3.2239 0.7555 24 1 1.0741 6.1089 -0.8157 25 1 1.7789 -2.8293 1.0251 26 1 0.9282 -2.5642 -0.5158 27 1 2.6283 -3.0912 -0.5169 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260546028.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:55 Heat of formation + Delta-G solvation = 68.675159 kcal Electronic energy + Delta-G solvation = -12407.124333 eV Core-core repulsion = 10201.098140 eV Total energy + Delta-G solvation = -2206.026193 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.06343 -36.86929 -35.34565 -33.86424 -32.54180 -28.84447 -28.20293 -27.68224 -24.74896 -21.74106 -21.53265 -18.55209 -17.68560 -17.40745 -16.50259 -16.11675 -15.09165 -15.00650 -14.42480 -14.03275 -13.93998 -13.78690 -13.38864 -13.03388 -12.77702 -12.70104 -12.50509 -11.93283 -11.63189 -11.30798 -10.70429 -10.51601 -9.72070 -8.96872 -7.96590 -6.16228 0.72556 1.43697 1.46480 1.52919 1.67565 1.74280 2.50743 3.26835 3.58875 3.86465 4.14260 4.20001 4.32867 4.49694 4.57524 4.73040 4.77540 4.99030 5.12123 5.41955 5.51129 5.77289 5.89039 6.16888 6.63956 7.05751 7.25435 7.54392 7.68914 9.07233 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049074 B = 0.010533 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.430781 B = 2657.725887 C = 2700.824894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.029 4.029 3 C -0.046 4.046 4 C 0.307 3.693 5 H 0.041 0.959 6 N -0.812 5.812 7 C -0.541 4.541 8 H 0.031 0.969 9 C 0.041 3.959 10 N -0.875 5.875 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.283 1.283 15 N -0.307 5.307 16 N -0.132 5.132 17 N -0.290 5.290 18 C 0.070 3.930 19 H 0.085 0.915 20 H 0.105 0.895 21 H 0.079 0.921 22 H 0.307 0.693 23 H 0.322 0.678 24 H 0.258 0.742 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -13.792 1.496 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.162 4.162 3 C -0.188 4.188 4 C 0.195 3.805 5 H 0.058 0.942 6 N -0.337 5.337 7 C -0.580 4.580 8 H 0.049 0.951 9 C -0.163 4.163 10 N -0.511 5.511 11 Si 0.772 3.228 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.209 1.209 15 N -0.173 5.173 16 N -0.110 5.110 17 N -0.086 5.086 18 C -0.069 4.069 19 H 0.104 0.896 20 H 0.123 0.877 21 H 0.098 0.902 22 H 0.118 0.882 23 H 0.133 0.867 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.142 0.858 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.766 -13.430 1.316 14.010 hybrid contribution -0.147 -0.178 -0.663 0.702 sum -3.913 -13.608 0.653 14.174 Atomic orbital electron populations 1.20362 0.83276 1.04857 1.04200 1.22498 0.97936 0.86067 1.09672 1.23879 0.89169 1.00740 1.04969 1.17301 0.92923 0.78595 0.91708 0.94160 1.59138 1.10462 1.60868 1.03199 1.20932 1.45614 0.96554 0.94923 0.95057 1.25560 0.94114 0.97116 0.99478 1.70183 1.41424 1.07009 1.32486 0.85848 0.78174 0.77634 0.81182 1.19547 1.20355 1.20873 1.74843 1.22989 1.01033 1.18393 1.78030 1.03082 1.07120 1.22763 1.47491 1.04262 1.09960 1.46912 1.22672 1.03914 0.73751 1.06565 0.89608 0.87667 0.90249 0.88215 0.86723 0.93310 0.87209 0.85794 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 9.73 71.24 0.69 -1.08 15 2 C -0.03 -1.04 7.00 41.36 0.29 -0.75 15 3 C -0.05 -2.15 5.99 41.60 0.25 -1.90 15 4 C 0.31 15.97 3.02 43.42 0.13 16.10 15 5 H 0.04 2.17 6.99 -2.39 -0.02 2.15 15 6 N -0.81 -41.56 8.53 -174.94 -1.49 -43.05 15 7 C -0.54 -31.33 8.71 25.60 0.22 -31.10 15 8 H 0.03 1.88 7.74 -2.91 -0.02 1.86 15 9 C 0.04 2.36 5.39 84.65 0.46 2.82 15 10 N -0.88 -51.48 12.77 21.45 0.27 -51.20 15 11 Si 0.95 45.02 29.54 68.60 2.03 47.05 15 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 14 H -0.28 -13.62 7.11 99.48 0.71 -12.91 15 15 N -0.31 -14.79 12.33 -48.60 -0.60 -15.39 15 16 N -0.13 -5.43 13.17 37.02 0.49 -4.95 15 17 N -0.29 -9.34 3.74 -355.73 -1.33 -10.67 15 18 C 0.07 1.15 11.06 127.77 1.41 2.56 15 19 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 20 H 0.10 1.73 7.81 -2.39 -0.02 1.71 15 21 H 0.08 2.27 7.16 -2.39 -0.02 2.25 15 22 H 0.31 14.12 9.06 -89.69 -0.81 13.31 15 23 H 0.32 16.85 8.91 -89.70 -0.80 16.05 15 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 15 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.12 1.29 7.72 -2.39 -0.02 1.27 15 27 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 Total: -1.00 -73.45 240.41 2.41 -71.05 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.41 Total: 20.51 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.45 Total: -13.35 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -2.66 Total: -125.26 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.45 2.41 -71.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546028.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.721 kcal (2) G-P(sol) polarization free energy of solvation -73.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds