Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35038 * 1 3 3 C 1.40068 * 119.99983 * 2 1 4 4 H 1.07998 * 120.00121 * 153.71009 * 3 2 1 5 5 C 1.40314 * 119.99981 * 333.70968 * 3 2 1 6 6 N 1.30688 * 119.99931 * 161.36165 * 5 3 2 7 7 Si 1.86805 * 119.99907 * 341.36627 * 5 3 2 8 8 H 1.48492 * 109.47117 * 89.43318 * 7 5 3 9 9 H 1.48499 * 109.46436 * 209.43335 * 7 5 3 10 10 H 1.48504 * 109.46919 * 329.42740 * 7 5 3 11 11 C 1.50701 * 120.00056 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47193 * 94.99899 * 11 2 1 13 13 C 1.53171 * 109.54743 * 294.55851 * 12 11 2 14 14 C 1.53092 * 109.16542 * 183.15112 * 13 12 11 15 15 O 1.42898 * 109.41523 * 57.60927 * 14 13 12 16 16 C 1.42903 * 114.09759 * 298.84335 * 15 14 13 17 17 C 1.53093 * 109.41591 * 61.15594 * 16 15 14 18 18 H 1.07998 * 120.00176 * 354.06215 * 1 2 3 19 19 H 1.08001 * 119.99833 * 174.05673 * 1 2 3 20 20 H 0.96995 * 119.99879 * 180.02562 * 6 5 3 21 21 H 1.09003 * 109.47127 * 335.00537 * 11 2 1 22 22 H 1.08994 * 109.47293 * 215.00406 * 11 2 1 23 23 H 1.09007 * 109.61533 * 54.78141 * 12 11 2 24 24 H 1.09004 * 109.52568 * 303.05784 * 13 12 11 25 25 H 1.09005 * 109.52670 * 63.24143 * 13 12 11 26 26 H 1.08995 * 109.48087 * 297.62372 * 14 13 12 27 27 H 1.09003 * 109.48058 * 177.59433 * 14 13 12 28 28 H 1.09004 * 109.47942 * 301.17387 * 16 15 14 29 29 H 1.08999 * 109.49262 * 181.14724 * 16 15 14 30 30 H 1.09004 * 109.52192 * 182.48565 * 17 16 15 31 31 H 1.08997 * 109.51812 * 62.29923 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0469 1.2614 0.4142 5 6 1.4580 2.3653 -0.5382 6 7 1.9239 3.5460 -0.2271 7 14 0.0028 2.2117 -1.6994 8 1 -1.2584 2.2158 -0.9157 9 1 0.0016 3.3565 -2.6453 10 1 0.1088 0.9409 -2.4604 11 6 2.1039 -1.3051 0.0006 12 6 2.4678 -1.6846 -1.4362 13 6 1.1893 -1.9672 -2.2310 14 6 1.5658 -2.4219 -3.6436 15 8 2.4018 -3.5781 -3.5634 16 6 3.6334 -3.3608 -2.8719 17 6 3.3399 -2.9438 -1.4284 18 1 -0.5400 0.9303 0.0968 19 1 -0.5400 -0.9303 -0.0968 20 1 1.5140 4.3426 -0.5988 21 1 1.4789 -2.0853 0.4352 22 1 3.0145 -1.1986 0.5900 23 1 3.0142 -0.8655 -1.9038 24 1 0.6184 -2.7526 -1.7356 25 1 0.5880 -1.0599 -2.2886 26 1 2.1014 -1.6207 -4.1527 27 1 0.6609 -2.6655 -4.2004 28 1 4.1961 -2.5718 -3.3710 29 1 4.2182 -4.2806 -2.8728 30 1 4.2768 -2.7348 -0.9120 31 1 2.8126 -3.7489 -0.9168 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260609351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = -57.456986 kcal Electronic energy + Delta-G solvation = -12825.324011 eV Core-core repulsion = 10685.075910 eV Total energy + Delta-G solvation = -2140.248101 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08488 -35.81591 -33.45674 -31.43157 -30.65925 -27.02474 -24.80552 -23.10734 -22.71216 -19.54574 -18.97883 -15.87317 -15.79291 -15.63949 -15.01509 -14.48340 -14.21728 -13.55300 -12.84755 -12.66366 -12.38853 -11.96992 -11.81434 -11.23273 -10.97696 -10.63253 -10.58822 -10.22842 -10.10293 -9.80889 -9.63294 -9.40148 -9.05476 -8.89883 -7.49486 -6.70107 -4.32460 3.22946 3.33423 3.42126 3.76238 4.13659 4.23116 5.07112 5.19950 5.28098 5.35744 5.48215 5.55486 5.72330 5.85607 5.93891 6.14462 6.20317 6.31985 6.44414 6.56321 6.62103 6.81333 6.85238 6.99814 7.30448 7.44211 7.45830 7.86991 8.19134 8.72036 8.93370 9.18455 10.32841 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.011598 C = 0.010743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.725409 B = 2413.628393 C = 2605.691247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 C 0.047 3.953 3 C -0.459 4.459 4 H 0.076 0.924 5 C 0.084 3.916 6 N -0.828 5.828 7 Si 0.934 3.066 8 H -0.279 1.279 9 H -0.310 1.310 10 H -0.250 1.250 11 C -0.071 4.071 12 C -0.077 4.077 13 C -0.152 4.152 14 C 0.060 3.940 15 O -0.391 6.391 16 C 0.062 3.938 17 C -0.151 4.151 18 H 0.074 0.926 19 H 0.059 0.941 20 H 0.279 0.721 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -9.272 -5.551 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.482 4.482 2 C 0.044 3.956 3 C -0.488 4.488 4 H 0.094 0.906 5 C -0.133 4.133 6 N -0.453 5.453 7 Si 0.765 3.235 8 H -0.206 1.206 9 H -0.240 1.240 10 H -0.174 1.174 11 C -0.109 4.109 12 C -0.096 4.096 13 C -0.190 4.190 14 C -0.017 4.017 15 O -0.310 6.310 16 C -0.015 4.015 17 C -0.189 4.189 18 H 0.092 0.908 19 H 0.078 0.922 20 H 0.090 0.910 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.587 -9.190 -5.623 10.890 hybrid contribution -0.595 0.482 -0.252 0.806 sum 0.992 -8.708 -5.875 10.551 Atomic orbital electron populations 1.23118 0.94643 0.97951 1.32440 1.18656 0.93005 0.92229 0.91672 1.19190 1.02635 0.91669 1.35338 0.90581 1.26258 0.96741 0.94336 0.95923 1.69669 1.39440 0.98972 1.37241 0.85956 0.80815 0.77165 0.79610 1.20580 1.23977 1.17383 1.20619 0.99168 0.96569 0.94501 1.21056 0.95380 0.96126 0.97004 1.22338 0.98764 1.02766 0.95107 1.22634 0.94042 0.87792 0.97197 1.87845 1.30975 1.35579 1.76587 1.22545 0.86111 1.00788 0.92049 1.22282 1.00691 0.98900 0.96985 0.90774 0.92232 0.91043 0.93323 0.92617 0.90723 0.91819 0.89252 0.93411 0.89470 0.93443 0.89568 0.91208 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -11.18 10.15 29.59 0.30 -10.88 16 2 C 0.05 1.17 4.06 -105.07 -0.43 0.74 16 3 C -0.46 -12.78 9.57 -38.12 -0.36 -13.14 16 4 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 5 C 0.08 2.33 5.38 -17.26 -0.09 2.24 16 6 N -0.83 -23.49 13.92 55.57 0.77 -22.71 16 7 Si 0.93 22.81 24.54 -169.99 -4.17 18.64 16 8 H -0.28 -6.90 6.48 56.52 0.37 -6.53 16 9 H -0.31 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.25 -5.90 5.76 56.52 0.33 -5.58 16 11 C -0.07 -1.48 4.83 -27.88 -0.13 -1.61 16 12 C -0.08 -1.42 2.26 -90.44 -0.20 -1.63 16 13 C -0.15 -2.75 4.98 -26.60 -0.13 -2.88 16 14 C 0.06 0.94 6.84 37.20 0.25 1.20 16 15 O -0.39 -6.25 10.77 -35.23 -0.38 -6.63 16 16 C 0.06 0.86 6.84 37.21 0.25 1.11 16 17 C -0.15 -2.26 5.42 -26.59 -0.14 -2.41 16 18 H 0.07 2.00 4.47 -52.49 -0.23 1.76 16 19 H 0.06 1.41 8.06 -52.49 -0.42 0.99 16 20 H 0.28 7.27 8.29 -40.82 -0.34 6.93 16 21 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 22 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 23 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.83 5.49 -51.93 -0.28 1.54 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 244.59 15.07 3.69 3.69 Total: -1.00 -28.69 244.59 -5.61 -34.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.83 Total: -0.04 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -0.69 Total: -27.26 kcal Atomic # 7 Polarization: -23.49 SS G_CDS: 0.77 Total: -22.71 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.38 Total: -6.63 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.17 Total: 18.64 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.69 -5.61 -34.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.148 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds