Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35038 * 1 3 3 C 1.40068 * 119.99983 * 2 1 4 4 H 1.07998 * 120.00121 * 153.71009 * 3 2 1 5 5 C 1.40314 * 119.99981 * 333.70968 * 3 2 1 6 6 N 1.30688 * 119.99931 * 161.36165 * 5 3 2 7 7 Si 1.86805 * 119.99907 * 341.36627 * 5 3 2 8 8 H 1.48492 * 109.47117 * 89.43318 * 7 5 3 9 9 H 1.48499 * 109.46436 * 209.43335 * 7 5 3 10 10 H 1.48504 * 109.46919 * 329.42740 * 7 5 3 11 11 C 1.50701 * 120.00056 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47193 * 94.99899 * 11 2 1 13 13 C 1.53171 * 109.54743 * 294.55851 * 12 11 2 14 14 C 1.53092 * 109.16542 * 183.15112 * 13 12 11 15 15 O 1.42898 * 109.41523 * 57.60927 * 14 13 12 16 16 C 1.42903 * 114.09759 * 298.84335 * 15 14 13 17 17 C 1.53093 * 109.41591 * 61.15594 * 16 15 14 18 18 H 1.07998 * 120.00176 * 354.06215 * 1 2 3 19 19 H 1.08001 * 119.99833 * 174.05673 * 1 2 3 20 20 H 0.96995 * 119.99879 * 180.02562 * 6 5 3 21 21 H 1.09003 * 109.47127 * 335.00537 * 11 2 1 22 22 H 1.08994 * 109.47293 * 215.00406 * 11 2 1 23 23 H 1.09007 * 109.61533 * 54.78141 * 12 11 2 24 24 H 1.09004 * 109.52568 * 303.05784 * 13 12 11 25 25 H 1.09005 * 109.52670 * 63.24143 * 13 12 11 26 26 H 1.08995 * 109.48087 * 297.62372 * 14 13 12 27 27 H 1.09003 * 109.48058 * 177.59433 * 14 13 12 28 28 H 1.09004 * 109.47942 * 301.17387 * 16 15 14 29 29 H 1.08999 * 109.49262 * 181.14724 * 16 15 14 30 30 H 1.09004 * 109.52192 * 182.48565 * 17 16 15 31 31 H 1.08997 * 109.51812 * 62.29923 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0469 1.2614 0.4142 5 6 1.4580 2.3653 -0.5382 6 7 1.9239 3.5460 -0.2271 7 14 0.0028 2.2117 -1.6994 8 1 -1.2584 2.2158 -0.9157 9 1 0.0016 3.3565 -2.6453 10 1 0.1088 0.9409 -2.4604 11 6 2.1039 -1.3051 0.0006 12 6 2.4678 -1.6846 -1.4362 13 6 1.1893 -1.9672 -2.2310 14 6 1.5658 -2.4219 -3.6436 15 8 2.4018 -3.5781 -3.5634 16 6 3.6334 -3.3608 -2.8719 17 6 3.3399 -2.9438 -1.4284 18 1 -0.5400 0.9303 0.0968 19 1 -0.5400 -0.9303 -0.0968 20 1 1.5140 4.3426 -0.5988 21 1 1.4789 -2.0853 0.4352 22 1 3.0145 -1.1986 0.5900 23 1 3.0142 -0.8655 -1.9038 24 1 0.6184 -2.7526 -1.7356 25 1 0.5880 -1.0599 -2.2886 26 1 2.1014 -1.6207 -4.1527 27 1 0.6609 -2.6655 -4.2004 28 1 4.1961 -2.5718 -3.3710 29 1 4.2182 -4.2806 -2.8728 30 1 4.2768 -2.7348 -0.9120 31 1 2.8126 -3.7489 -0.9168 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260609351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -75.403849 kcal Electronic energy + Delta-G solvation = -12826.102245 eV Core-core repulsion = 10685.075910 eV Total energy + Delta-G solvation = -2141.026335 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37021 -37.54268 -35.26358 -33.23992 -31.92142 -28.62112 -26.89238 -24.36752 -24.14348 -21.06221 -20.80657 -17.82253 -17.25752 -16.95721 -16.79129 -15.83496 -15.62254 -15.13125 -14.70144 -14.35967 -13.93641 -13.74983 -13.22232 -12.87131 -12.43940 -12.35295 -12.16404 -11.90223 -11.73219 -11.64495 -11.20080 -11.06592 -10.84317 -10.42220 -9.50204 -8.82115 -6.49483 1.24689 1.33880 1.46684 1.75997 2.21524 3.00151 3.12338 3.87182 3.92528 4.07576 4.15964 4.35081 4.51444 4.56089 4.68405 4.79286 4.82279 4.90131 5.01643 5.11052 5.11996 5.23750 5.27234 5.36729 5.40515 5.55522 5.78298 6.03342 6.28504 6.61242 6.85765 7.09351 8.25295 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.011598 C = 0.010743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.725409 B = 2413.628393 C = 2605.691247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.435 4.435 2 C 0.044 3.956 3 C -0.485 4.485 4 H 0.048 0.952 5 C 0.044 3.956 6 N -0.863 5.863 7 Si 0.980 3.020 8 H -0.282 1.282 9 H -0.297 1.297 10 H -0.238 1.238 11 C -0.069 4.069 12 C -0.077 4.077 13 C -0.151 4.151 14 C 0.063 3.937 15 O -0.398 6.398 16 C 0.058 3.942 17 C -0.144 4.144 18 H 0.058 0.942 19 H 0.079 0.921 20 H 0.288 0.712 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -11.075 -6.594 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 C 0.042 3.958 3 C -0.515 4.515 4 H 0.066 0.934 5 C -0.169 4.169 6 N -0.490 5.490 7 Si 0.807 3.193 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.162 1.162 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.188 4.188 14 C -0.014 4.014 15 O -0.318 6.318 16 C -0.018 4.018 17 C -0.181 4.181 18 H 0.076 0.924 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.248 -11.000 -6.666 12.922 hybrid contribution -0.463 1.039 0.154 1.148 sum 0.785 -9.961 -6.511 11.926 Atomic orbital electron populations 1.23206 0.94708 0.98073 1.31529 1.18914 0.93274 0.93213 0.90402 1.19330 1.01987 0.93374 1.36851 0.93390 1.26975 0.98979 0.94009 0.96903 1.69701 1.41105 0.99719 1.38498 0.85241 0.77752 0.78091 0.78177 1.20956 1.22554 1.16161 1.20621 0.98865 0.94613 0.96532 1.21009 0.96212 0.97263 0.95032 1.22284 0.98098 1.01669 0.96775 1.22626 0.94988 0.87987 0.95770 1.87846 1.31613 1.35520 1.76776 1.22732 0.85703 1.02465 0.90879 1.22228 1.00548 0.97057 0.98300 0.92418 0.90305 0.90221 0.91934 0.92571 0.92773 0.91365 0.91879 0.93332 0.87599 0.93079 0.86641 0.89960 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -21.51 10.15 67.08 0.68 -20.83 16 2 C 0.04 2.19 4.06 -20.16 -0.08 2.11 16 3 C -0.49 -27.55 9.57 23.22 0.22 -27.33 16 4 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 5 C 0.04 2.49 5.38 85.37 0.46 2.95 16 6 N -0.86 -49.85 13.92 21.89 0.30 -49.54 16 7 Si 0.98 46.51 24.54 68.60 1.68 48.20 16 8 H -0.28 -13.53 6.48 99.48 0.64 -12.89 16 9 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 10 H -0.24 -10.78 5.76 99.48 0.57 -10.20 16 11 C -0.07 -2.78 4.83 29.85 0.14 -2.64 16 12 C -0.08 -2.70 2.26 -10.68 -0.02 -2.72 16 13 C -0.15 -5.12 4.98 30.68 0.15 -4.97 16 14 C 0.06 1.82 6.84 72.01 0.49 2.31 16 15 O -0.40 -11.44 10.77 -148.98 -1.60 -13.05 16 16 C 0.06 1.43 6.84 72.01 0.49 1.92 16 17 C -0.14 -3.90 5.42 30.68 0.17 -3.74 16 18 H 0.06 3.05 4.47 -2.91 -0.01 3.04 16 19 H 0.08 3.56 8.06 -2.91 -0.02 3.54 16 20 H 0.29 15.15 8.29 -92.71 -0.77 14.38 16 21 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 22 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.06 2.47 5.49 -2.38 -0.01 2.46 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -60.64 244.59 3.98 -56.66 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.89 Total: 10.66 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 2.71 Total: -52.93 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.30 Total: -49.54 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.60 Total: -13.05 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.68 Total: 48.20 kcal Total: -60.64 3.98 -56.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.741 kcal (2) G-P(sol) polarization free energy of solvation -60.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds