Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47528 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47327 * 119.99986 * 3 2 1 6 6 H 1.48506 * 109.46961 * 239.99761 * 3 2 1 7 7 C 1.37876 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99659 * 15.70896 * 7 2 1 9 9 C 1.50700 * 120.00421 * 195.71092 * 7 2 1 10 10 O 1.42901 * 110.14728 * 63.33901 * 9 7 2 11 11 C 1.56252 * 110.17052 * 301.52258 * 9 7 2 12 12 C 1.51730 * 101.91771 * 215.64941 * 11 9 7 13 13 H 1.09000 * 111.64102 * 288.10493 * 12 11 9 14 14 C 1.51736 * 122.51397 * 153.03590 * 12 11 9 15 15 C 1.56254 * 101.91878 * 206.96266 * 14 12 11 16 16 C 1.55916 * 105.87060 * 25.24657 * 15 14 12 17 17 C 1.49978 * 104.08115 * 6.58426 * 16 15 14 18 18 H 1.08994 * 108.49555 * 77.61174 * 17 16 15 19 19 C 1.49968 * 126.88410 * 209.62375 * 17 16 15 20 20 H 0.96997 * 120.00103 * 174.91951 * 1 2 3 21 21 H 0.96700 * 114.00236 * 306.47180 * 10 9 7 22 22 H 1.08996 * 110.93921 * 333.80664 * 11 9 7 23 23 H 1.08995 * 110.93721 * 97.49063 * 11 9 7 24 24 H 1.08996 * 110.94313 * 88.80936 * 14 12 11 25 25 H 1.09000 * 110.96863 * 325.12867 * 14 12 11 26 26 H 1.08993 * 110.16856 * 266.14734 * 15 14 12 27 27 H 1.08995 * 110.16978 * 144.34617 * 15 14 12 28 28 H 1.09000 * 110.50868 * 247.93367 * 16 15 14 29 29 H 1.09006 * 110.50933 * 125.22919 * 16 15 14 30 30 H 1.09004 * 110.50904 * 31.71718 * 19 17 16 31 31 H 1.09003 * 110.62512 * 269.08145 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4948 -2.1119 -0.2523 9 6 3.4693 -1.2182 0.3539 10 8 3.6568 -0.7916 1.7048 11 6 4.2738 -0.2984 -0.6199 12 6 5.5741 -1.0652 -0.7726 13 1 6.1782 -1.0166 0.1334 14 6 6.4450 -0.9555 -2.0103 15 6 7.1718 -2.3387 -2.0171 16 6 6.2353 -3.3162 -1.2435 17 6 4.9939 -2.5122 -0.9948 18 1 4.4140 -2.4775 -1.9170 19 6 4.0458 -2.6536 0.1585 20 1 -0.4850 -0.8367 -0.0744 21 1 3.2545 0.0644 1.9064 22 1 3.7625 -0.2037 -1.5778 23 1 4.4489 0.6810 -0.1749 24 1 7.1611 -0.1397 -1.9118 25 1 5.8362 -0.8310 -2.9058 26 1 8.1338 -2.2602 -1.5108 27 1 7.3123 -2.6844 -3.0412 28 1 6.6916 -3.6158 -0.3000 29 1 6.0081 -4.1905 -1.8535 30 1 4.5783 -2.9764 1.0532 31 1 3.2482 -3.3558 -0.0840 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -55.737037 kcal Electronic energy + Delta-G solvation = -13212.224410 eV Core-core repulsion = 11072.050891 eV Total energy + Delta-G solvation = -2140.173519 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60569 -35.87031 -32.39797 -31.80446 -29.75064 -26.61647 -25.54157 -23.24629 -19.87935 -19.62040 -18.86181 -17.60577 -15.56989 -15.05111 -14.58248 -14.08547 -13.79702 -13.27256 -12.80748 -12.34307 -12.14682 -11.46513 -11.04897 -10.97795 -10.86700 -10.61845 -10.42718 -10.13109 -10.01957 -9.76420 -9.57660 -9.24996 -9.05300 -8.78246 -8.07561 -6.53857 -4.23466 3.22139 3.34348 3.51575 4.33909 4.61715 5.05881 5.11572 5.17359 5.53323 5.59927 5.73834 5.84672 5.88085 6.06417 6.13585 6.15335 6.25119 6.33710 6.42436 6.47563 6.51184 6.67413 6.84526 6.86814 7.05655 7.15149 7.29932 7.96508 8.26235 8.77743 9.02375 9.49560 10.81541 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.049749 B = 0.013556 C = 0.012339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.690990 B = 2065.043835 C = 2268.682986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 1.054 2.946 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.614 4.614 8 H 0.061 0.939 9 C 0.222 3.778 10 O -0.588 6.588 11 C -0.148 4.148 12 C -0.107 4.107 13 H 0.073 0.927 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.111 4.111 18 H 0.064 0.936 19 C -0.077 4.077 20 H 0.270 0.730 21 H 0.360 0.640 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 -1.682 -3.129 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.178 4.178 3 Si 0.885 3.115 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.652 4.652 8 H 0.079 0.921 9 C 0.182 3.818 10 O -0.397 6.397 11 C -0.186 4.186 12 C -0.125 4.125 13 H 0.091 0.909 14 C -0.151 4.151 15 C -0.158 4.158 16 C -0.142 4.142 17 C -0.130 4.130 18 H 0.082 0.918 19 C -0.114 4.114 20 H 0.080 0.920 21 H 0.209 0.791 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.759 -0.625 -3.052 12.164 hybrid contribution -0.193 -1.153 -0.207 1.188 sum 11.565 -1.778 -3.259 12.146 Atomic orbital electron populations 1.70814 1.06878 1.31092 1.44333 1.25863 0.96388 1.02570 0.92983 0.84120 0.74379 0.75757 0.77282 1.21774 1.21154 1.20120 1.22540 0.94266 0.96235 1.52148 0.92083 1.20493 0.93748 0.88929 0.78630 1.86369 1.80158 1.41209 1.31916 1.23181 0.95398 0.98025 1.01974 1.22358 0.95815 0.97082 0.97278 0.90873 1.21996 0.98400 0.96262 0.98452 1.22897 0.98263 0.95035 0.99633 1.21431 0.95679 0.97370 0.99727 1.21579 0.95512 0.96060 0.99852 0.91797 1.21234 0.96872 0.97245 0.96067 0.91966 0.79145 0.90605 0.93254 0.92320 0.91633 0.92175 0.92302 0.92096 0.92310 0.92670 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.69 55.43 0.76 -26.55 16 2 C 0.03 0.80 5.37 -17.82 -0.10 0.70 16 3 Si 1.05 24.94 23.30 -169.99 -3.96 20.98 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.15 5.76 56.52 0.33 -5.83 16 6 H -0.28 -6.08 5.96 56.52 0.34 -5.75 16 7 C -0.61 -17.39 8.64 -34.44 -0.30 -17.69 16 8 H 0.06 1.86 7.63 -52.49 -0.40 1.46 16 9 C 0.22 5.45 0.94 -88.47 -0.08 5.36 16 10 O -0.59 -14.78 13.01 -35.23 -0.46 -15.24 16 11 C -0.15 -3.26 3.40 -25.63 -0.09 -3.34 16 12 C -0.11 -1.99 2.98 -89.47 -0.27 -2.25 16 13 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 14 C -0.11 -1.73 6.60 -25.63 -0.17 -1.90 16 15 C -0.12 -1.61 6.94 -23.43 -0.16 -1.77 16 16 C -0.10 -1.55 6.73 -26.67 -0.18 -1.73 16 17 C -0.11 -2.06 2.52 -91.19 -0.23 -2.29 16 18 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 19 C -0.08 -1.67 6.14 -26.68 -0.16 -1.83 16 20 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 21 H 0.36 8.66 5.62 45.56 0.26 8.92 16 22 H 0.08 1.73 7.03 -51.93 -0.36 1.37 16 23 H 0.05 1.06 5.40 -51.93 -0.28 0.78 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.17 8.02 -51.93 -0.42 0.75 16 31 H 0.06 1.39 7.48 -51.93 -0.39 1.00 16 LS Contribution 233.93 15.07 3.53 3.53 Total: -1.00 -29.79 233.93 -6.13 -35.92 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.26 Total: 8.11 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -1.74 Total: -26.75 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.76 Total: -26.55 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.46 Total: -15.24 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -3.96 Total: 20.98 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.79 -6.13 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.814 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds