Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47528 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47327 * 119.99986 * 3 2 1 6 6 H 1.48506 * 109.46961 * 239.99761 * 3 2 1 7 7 C 1.37876 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99659 * 15.70896 * 7 2 1 9 9 C 1.50700 * 120.00421 * 195.71092 * 7 2 1 10 10 O 1.42901 * 110.14728 * 63.33901 * 9 7 2 11 11 C 1.56252 * 110.17052 * 301.52258 * 9 7 2 12 12 C 1.51730 * 101.91771 * 215.64941 * 11 9 7 13 13 H 1.09000 * 111.64102 * 288.10493 * 12 11 9 14 14 C 1.51736 * 122.51397 * 153.03590 * 12 11 9 15 15 C 1.56254 * 101.91878 * 206.96266 * 14 12 11 16 16 C 1.55916 * 105.87060 * 25.24657 * 15 14 12 17 17 C 1.49978 * 104.08115 * 6.58426 * 16 15 14 18 18 H 1.08994 * 108.49555 * 77.61174 * 17 16 15 19 19 C 1.49968 * 126.88410 * 209.62375 * 17 16 15 20 20 H 0.96997 * 120.00103 * 174.91951 * 1 2 3 21 21 H 0.96700 * 114.00236 * 306.47180 * 10 9 7 22 22 H 1.08996 * 110.93921 * 333.80664 * 11 9 7 23 23 H 1.08995 * 110.93721 * 97.49063 * 11 9 7 24 24 H 1.08996 * 110.94313 * 88.80936 * 14 12 11 25 25 H 1.09000 * 110.96863 * 325.12867 * 14 12 11 26 26 H 1.08993 * 110.16856 * 266.14734 * 15 14 12 27 27 H 1.08995 * 110.16978 * 144.34617 * 15 14 12 28 28 H 1.09000 * 110.50868 * 247.93367 * 16 15 14 29 29 H 1.09006 * 110.50933 * 125.22919 * 16 15 14 30 30 H 1.09004 * 110.50904 * 31.71718 * 19 17 16 31 31 H 1.09003 * 110.62512 * 269.08145 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4948 -2.1119 -0.2523 9 6 3.4693 -1.2182 0.3539 10 8 3.6568 -0.7916 1.7048 11 6 4.2738 -0.2984 -0.6199 12 6 5.5741 -1.0652 -0.7726 13 1 6.1782 -1.0166 0.1334 14 6 6.4450 -0.9555 -2.0103 15 6 7.1718 -2.3387 -2.0171 16 6 6.2353 -3.3162 -1.2435 17 6 4.9939 -2.5122 -0.9948 18 1 4.4140 -2.4775 -1.9170 19 6 4.0458 -2.6536 0.1585 20 1 -0.4850 -0.8367 -0.0744 21 1 3.2545 0.0644 1.9064 22 1 3.7625 -0.2037 -1.5778 23 1 4.4489 0.6810 -0.1749 24 1 7.1611 -0.1397 -1.9118 25 1 5.8362 -0.8310 -2.9058 26 1 8.1338 -2.2602 -1.5108 27 1 7.3123 -2.6844 -3.0412 28 1 6.6916 -3.6158 -0.3000 29 1 6.0081 -4.1905 -1.8535 30 1 4.5783 -2.9764 1.0532 31 1 3.2482 -3.3558 -0.0840 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -76.917023 kcal Electronic energy + Delta-G solvation = -13213.142843 eV Core-core repulsion = 11072.050891 eV Total energy + Delta-G solvation = -2141.091952 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.15256 -37.63841 -34.59839 -33.45154 -31.21684 -28.47743 -27.00765 -25.01718 -21.59845 -20.95978 -20.45962 -19.73942 -17.31140 -16.85395 -16.17372 -15.51000 -15.26837 -15.07308 -14.65080 -14.10115 -13.79376 -13.00612 -12.84685 -12.61695 -12.26070 -12.09695 -11.92528 -11.79445 -11.52543 -11.43330 -11.17087 -11.02258 -10.90637 -10.67674 -10.15079 -8.84245 -6.56550 1.33055 1.45072 1.64176 2.35754 2.89405 3.24921 3.63524 3.85066 4.01191 4.25140 4.32682 4.38790 4.52954 4.67761 4.73336 4.78800 4.81425 4.92615 4.99231 5.05670 5.16476 5.23950 5.28630 5.35488 5.55512 5.57962 5.65688 5.87473 5.89612 6.40292 7.05635 7.26991 8.49134 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.049749 B = 0.013556 C = 0.012339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.690990 B = 2065.043835 C = 2268.682986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.019 4.019 3 Si 1.089 2.911 4 H -0.296 1.296 5 H -0.250 1.250 6 H -0.247 1.247 7 C -0.625 4.625 8 H 0.017 0.983 9 C 0.210 3.790 10 O -0.593 6.593 11 C -0.146 4.146 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.108 4.108 18 H 0.047 0.953 19 C -0.078 4.078 20 H 0.254 0.746 21 H 0.363 0.637 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.981 -0.895 -3.653 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.218 4.218 3 Si 0.911 3.089 4 H -0.223 1.223 5 H -0.175 1.175 6 H -0.172 1.172 7 C -0.663 4.663 8 H 0.036 0.964 9 C 0.170 3.830 10 O -0.402 6.402 11 C -0.183 4.183 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.127 4.127 18 H 0.066 0.934 19 C -0.116 4.116 20 H 0.063 0.937 21 H 0.212 0.788 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.097 0.126 -3.574 15.515 hybrid contribution -1.342 -1.507 -0.007 2.018 sum 13.755 -1.381 -3.582 14.281 Atomic orbital electron populations 1.70954 1.08173 1.30122 1.47039 1.27386 0.96251 1.06494 0.91667 0.83753 0.74107 0.71098 0.79922 1.22314 1.17526 1.17164 1.22771 0.96841 0.94728 1.51930 0.96421 1.20659 0.91911 0.91517 0.78901 1.86355 1.79953 1.41621 1.32240 1.22987 0.96816 0.98265 1.00265 1.22346 0.94788 0.95648 0.99400 0.90462 1.22025 0.98235 0.98396 0.96242 1.22868 0.98241 0.92991 1.00807 1.21475 0.93866 0.97829 1.00813 1.21544 0.96186 0.97672 0.97255 0.93397 1.21193 0.97199 0.95227 0.97989 0.93728 0.78790 0.91913 0.92227 0.90196 0.91945 0.90096 0.90376 0.91269 0.91050 0.92085 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.69 21.45 0.29 -58.21 16 2 C -0.02 -1.11 5.37 84.66 0.45 -0.65 16 3 Si 1.09 49.20 23.30 68.60 1.60 50.79 16 4 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.25 -9.87 5.76 99.48 0.57 -9.29 16 6 H -0.25 -10.06 5.96 99.48 0.59 -9.47 16 7 C -0.63 -36.64 8.64 25.60 0.22 -36.42 16 8 H 0.02 1.14 7.63 -2.91 -0.02 1.12 16 9 C 0.21 10.26 0.94 -9.40 -0.01 10.25 16 10 O -0.59 -29.18 13.01 -148.98 -1.94 -31.11 16 11 C -0.15 -6.11 3.40 31.31 0.11 -6.01 16 12 C -0.10 -3.53 2.98 -10.05 -0.03 -3.56 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.11 -2.92 6.60 31.31 0.21 -2.71 16 15 C -0.11 -2.42 6.94 32.74 0.23 -2.20 16 16 C -0.10 -2.68 6.73 30.63 0.21 -2.47 16 17 C -0.11 -3.82 2.52 -11.16 -0.03 -3.84 16 18 H 0.05 1.83 7.96 -2.39 -0.02 1.81 16 19 C -0.08 -3.42 6.14 30.63 0.19 -3.23 16 20 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 21 H 0.36 16.90 5.62 -74.06 -0.42 16.48 16 22 H 0.06 2.78 7.03 -2.39 -0.02 2.76 16 23 H 0.06 2.37 5.40 -2.39 -0.01 2.35 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.06 2.54 8.02 -2.39 -0.02 2.52 16 31 H 0.04 1.90 7.48 -2.39 -0.02 1.89 16 Total: -1.00 -66.23 233.93 1.90 -64.33 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.40 Total: 25.04 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 1.54 Total: -50.83 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.29 Total: -58.21 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.94 Total: -31.11 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.60 Total: 50.79 kcal Total: -66.23 1.90 -64.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.592 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds