Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 13 13 N 1.30881 * 125.89322 * 225.02384 * 12 2 1 14 14 C 1.33657 * 109.76805 * 179.97438 * 13 12 2 15 15 N 1.39598 * 125.61209 * 180.02562 * 14 13 12 16 16 N 1.31203 * 108.77654 * 0.02562 * 14 13 12 17 17 N 1.34341 * 125.89022 * 44.71998 * 12 2 1 18 18 H 0.96997 * 126.76197 * 0.03136 * 17 12 2 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 0.97008 * 119.99888 * 0.02562 * 15 14 13 27 27 H 0.96997 * 120.00462 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7121 12 6 2.0323 -0.7105 -1.2305 13 7 2.9947 -1.5968 -1.2656 14 6 3.1749 -2.0189 -2.5210 15 7 4.1159 -2.9638 -2.9336 16 7 2.3219 -1.3988 -3.3015 17 7 1.5658 -0.5474 -2.4797 18 1 0.8494 0.0438 -2.7593 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 4.7089 -3.3735 -2.2843 27 1 4.1769 -3.2109 -3.8696 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260931093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = 83.461256 kcal Electronic energy + Delta-G solvation = -12539.255789 eV Core-core repulsion = 10333.870769 eV Total energy + Delta-G solvation = -2205.385020 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.16594 -35.75043 -33.87929 -31.30335 -30.95950 -28.45727 -25.86065 -25.17129 -22.47693 -20.48016 -19.21347 -17.15273 -16.12783 -15.59410 -15.05833 -14.69141 -14.57347 -13.33314 -12.71249 -12.01987 -11.52041 -11.25571 -11.18902 -10.79470 -10.63297 -10.51224 -10.27895 -9.93067 -9.88402 -9.09527 -8.82657 -8.76500 -8.38066 -7.71118 -6.02302 -4.07666 2.61341 3.31831 3.33829 3.40052 3.46916 3.99680 4.14564 4.45497 5.26802 5.49793 5.91046 6.45025 6.56816 6.63766 6.73518 6.81130 7.07530 7.18835 7.35972 7.57322 7.81604 7.85045 7.92254 8.08940 8.11733 8.32458 8.99166 9.22506 9.57288 11.01485 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.012449 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.867914 B = 2248.638904 C = 2693.305533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 C -0.129 4.129 4 C -0.488 4.488 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.359 3.641 13 N -0.562 5.562 14 C 0.461 3.539 15 N -0.832 5.832 16 N -0.402 5.402 17 N -0.499 5.499 18 H 0.432 0.568 19 H 0.010 0.990 20 H 0.101 0.899 21 H 0.033 0.967 22 H 0.099 0.901 23 H 0.034 0.966 24 H 0.010 0.990 25 H 0.261 0.739 26 H 0.410 0.590 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -1.891 -5.940 6.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.129 3.871 3 C -0.188 4.188 4 C -0.527 4.527 5 H 0.096 0.904 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.081 3.919 13 N -0.296 5.296 14 C 0.089 3.911 15 N -0.388 5.388 16 N -0.242 5.242 17 N -0.216 5.216 18 H 0.276 0.724 19 H 0.029 0.971 20 H 0.119 0.881 21 H 0.052 0.948 22 H 0.118 0.882 23 H 0.053 0.947 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.240 0.760 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.404 -2.008 -6.239 6.703 hybrid contribution 0.091 -0.276 0.542 0.615 sum 1.495 -2.284 -5.697 6.317 Atomic orbital electron populations 1.21916 0.96106 0.99992 1.01292 1.17161 0.92627 0.91754 0.85588 1.21854 0.99413 0.96390 1.01126 1.21094 1.30827 1.12453 0.88326 0.90437 1.24901 0.95010 0.95086 0.98988 1.69770 1.37189 1.23082 1.23443 0.86433 0.78414 0.80190 0.82042 1.20714 1.21427 1.19844 1.25309 0.87880 0.90548 0.88139 1.70367 1.22317 1.18193 1.18741 1.20630 0.90707 0.91453 0.88325 1.40803 1.39989 1.46488 1.11538 1.77868 1.14588 1.15879 1.15909 1.47607 1.31768 1.36186 1.06078 0.72392 0.97111 0.88070 0.94779 0.88231 0.94660 0.97074 0.92916 0.76004 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.12 37.16 0.30 -2.69 15 2 C 0.13 3.14 0.72 -156.81 -0.11 3.02 15 3 C -0.13 -2.95 8.23 37.15 0.31 -2.64 15 4 C -0.49 -12.98 7.89 -34.44 -0.27 -13.25 15 5 H 0.08 2.17 7.01 -52.49 -0.37 1.80 15 6 C 0.06 1.58 5.15 -17.82 -0.09 1.49 15 7 N -0.90 -23.41 9.35 55.43 0.52 -22.89 15 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 12 C 0.36 8.21 6.48 -155.73 -1.01 7.20 15 13 N -0.56 -13.22 10.09 -11.13 -0.11 -13.33 15 14 C 0.46 9.51 9.44 -321.18 -3.03 6.48 15 15 N -0.83 -12.63 9.13 30.00 0.27 -12.36 15 16 N -0.40 -8.28 12.82 29.99 0.38 -7.89 15 17 N -0.50 -10.03 7.26 32.62 0.24 -9.79 15 18 H 0.43 7.29 8.52 -182.35 -1.55 5.74 15 19 H 0.01 0.19 7.68 -51.93 -0.40 -0.21 15 20 H 0.10 2.43 6.07 -51.93 -0.32 2.12 15 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.10 2.43 6.07 -51.93 -0.32 2.12 15 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 15 26 H 0.41 5.51 8.96 -40.82 -0.37 5.14 15 27 H 0.41 4.95 8.96 -40.82 -0.37 4.58 15 LS Contribution 231.54 15.07 3.49 3.49 Total: -1.00 -29.36 231.54 -8.22 -37.58 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.08 Total: 9.65 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -3.91 Total: -0.40 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: 1.30 Total: -66.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.36 -8.22 -37.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.042 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds