Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 13 13 N 1.30881 * 125.89322 * 225.02384 * 12 2 1 14 14 C 1.33657 * 109.76805 * 179.97438 * 13 12 2 15 15 N 1.39598 * 125.61209 * 180.02562 * 14 13 12 16 16 N 1.31203 * 108.77654 * 0.02562 * 14 13 12 17 17 N 1.34341 * 125.89022 * 44.71998 * 12 2 1 18 18 H 0.96997 * 126.76197 * 0.03136 * 17 12 2 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 0.97008 * 119.99888 * 0.02562 * 15 14 13 27 27 H 0.96997 * 120.00462 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7121 12 6 2.0323 -0.7105 -1.2305 13 7 2.9947 -1.5968 -1.2656 14 6 3.1749 -2.0189 -2.5210 15 7 4.1159 -2.9638 -2.9336 16 7 2.3219 -1.3988 -3.3015 17 7 1.5658 -0.5474 -2.4797 18 1 0.8494 0.0438 -2.7593 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 4.7089 -3.3735 -2.2843 27 1 4.1769 -3.2109 -3.8696 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260931093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = 65.254738 kcal Electronic energy + Delta-G solvation = -12540.045283 eV Core-core repulsion = 10333.870769 eV Total energy + Delta-G solvation = -2206.174514 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.80356 -37.54345 -35.37066 -33.19878 -32.60324 -30.06709 -27.65825 -27.14039 -24.21615 -22.04382 -20.98432 -18.73377 -17.98552 -17.17355 -16.66936 -16.33605 -16.25878 -15.13742 -14.55282 -13.77780 -13.34372 -13.04010 -12.97470 -12.55412 -12.49901 -12.16173 -12.11584 -11.74386 -11.71447 -10.88624 -10.58461 -10.53424 -10.33385 -9.15667 -8.00284 -6.10866 0.94832 1.48179 1.50667 1.59827 1.85325 2.34187 2.51714 2.70351 3.26047 3.87670 4.25156 4.69038 4.82469 4.89473 5.02080 5.20460 5.28382 5.52301 5.54188 5.74698 5.99992 6.06597 6.31398 6.51450 6.52001 6.76267 6.93845 7.54970 7.68129 9.01117 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.012449 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.867914 B = 2248.638904 C = 2693.305533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.127 3.873 3 C -0.119 4.119 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.346 3.654 13 N -0.595 5.595 14 C 0.451 3.549 15 N -0.811 5.811 16 N -0.405 5.405 17 N -0.486 5.486 18 H 0.445 0.555 19 H 0.043 0.957 20 H 0.082 0.918 21 H 0.024 0.976 22 H 0.082 0.918 23 H 0.020 0.980 24 H 0.038 0.962 25 H 0.262 0.738 26 H 0.419 0.581 27 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -2.027 -6.642 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.124 3.876 3 C -0.178 4.178 4 C -0.547 4.547 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.068 3.932 13 N -0.330 5.330 14 C 0.079 3.921 15 N -0.370 5.370 16 N -0.246 5.246 17 N -0.205 5.205 18 H 0.292 0.708 19 H 0.062 0.938 20 H 0.100 0.900 21 H 0.043 0.957 22 H 0.101 0.899 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.251 0.749 27 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.407 -2.147 -6.969 7.426 hybrid contribution 0.117 -0.260 0.712 0.767 sum 1.523 -2.407 -6.257 6.875 Atomic orbital electron populations 1.21758 0.95055 0.99573 1.01967 1.17116 0.93432 0.91900 0.85187 1.21702 0.98411 0.96102 1.01587 1.21191 1.31127 1.12317 0.90033 0.92580 1.25410 0.95271 0.95729 1.00795 1.69850 1.37249 1.23370 1.23853 0.85691 0.78046 0.78890 0.79736 1.20610 1.20694 1.20467 1.25015 0.88512 0.91079 0.88634 1.70307 1.23151 1.19045 1.20477 1.21044 0.91458 0.92128 0.87499 1.40823 1.38569 1.44846 1.12759 1.77836 1.14797 1.16116 1.15871 1.47505 1.31777 1.36032 1.05152 0.70765 0.93772 0.89957 0.95669 0.89942 0.96027 0.94293 0.92814 0.74929 0.74696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.12 71.98 0.58 -4.82 15 2 C 0.13 5.94 0.72 -53.67 -0.04 5.91 15 3 C -0.12 -5.34 8.23 71.98 0.59 -4.74 15 4 C -0.51 -27.09 7.89 25.60 0.20 -26.89 15 5 H 0.06 3.18 7.01 -2.91 -0.02 3.16 15 6 C 0.03 1.41 5.15 84.66 0.44 1.85 15 7 N -0.90 -46.94 9.35 21.45 0.20 -46.74 15 8 Si 0.95 42.86 29.54 68.60 2.03 44.89 15 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 12 C 0.35 15.46 6.48 138.24 0.90 16.36 15 13 N -0.59 -27.51 10.09 -189.12 -1.91 -29.42 15 14 C 0.45 17.87 9.44 260.92 2.46 20.34 15 15 N -0.81 -22.95 9.13 -59.01 -0.54 -23.49 15 16 N -0.41 -15.87 12.82 -59.03 -0.76 -16.63 15 17 N -0.49 -18.58 7.26 -50.72 -0.37 -18.95 15 18 H 0.45 13.92 8.52 -213.11 -1.81 12.11 15 19 H 0.04 1.56 7.68 -2.39 -0.02 1.54 15 20 H 0.08 3.89 6.07 -2.39 -0.01 3.88 15 21 H 0.02 1.08 8.14 -2.38 -0.02 1.06 15 22 H 0.08 3.98 6.07 -2.39 -0.01 3.97 15 23 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 25 H 0.26 13.10 8.31 -92.71 -0.77 12.33 15 26 H 0.42 10.46 8.96 -92.70 -0.83 9.62 15 27 H 0.42 9.21 8.96 -92.71 -0.83 8.38 15 Total: -1.00 -60.92 231.54 1.54 -59.38 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -2.25 Total: 22.96 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.13 Total: 7.99 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -3.37 Total: -135.22 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -60.92 1.54 -59.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.633 kcal (2) G-P(sol) polarization free energy of solvation -60.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds