Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48496 * 109.47265 * 269.99447 * 3 2 1 5 5 H 1.48500 * 109.47412 * 29.99815 * 3 2 1 6 6 H 1.48496 * 109.47405 * 149.99558 * 3 2 1 7 7 C 1.37870 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00160 * 182.33217 * 7 2 1 9 9 C 1.50707 * 120.00274 * 2.33483 * 7 2 1 10 10 C 1.53002 * 109.57299 * 295.72831 * 9 7 2 11 11 C 1.53008 * 117.49485 * 1.19564 * 10 9 7 12 12 C 1.52996 * 117.49731 * 292.53888 * 10 9 7 13 13 C 1.53181 * 109.51803 * 55.88387 * 9 7 2 14 14 C 1.53174 * 109.03521 * 62.92792 * 13 9 7 15 15 C 1.53089 * 109.16351 * 56.97888 * 14 13 9 16 16 O 1.42904 * 109.41738 * 302.38795 * 15 14 13 17 17 C 1.42901 * 114.09446 * 61.15723 * 16 15 14 18 18 H 0.96997 * 119.99583 * 0.02562 * 1 2 3 19 19 H 1.08997 * 115.55078 * 146.86288 * 10 9 7 20 20 H 1.08995 * 117.50043 * 0.02562 * 11 10 9 21 21 H 1.08996 * 117.49472 * 145.02270 * 11 10 9 22 22 H 1.08998 * 117.50072 * 214.98256 * 12 10 9 23 23 H 1.09004 * 117.50359 * 359.97270 * 12 10 9 24 24 H 1.09001 * 109.54180 * 303.05806 * 13 9 7 25 25 H 1.08997 * 109.60910 * 182.83894 * 13 9 7 26 26 H 1.09001 * 109.52152 * 297.07068 * 14 13 9 27 27 H 1.09000 * 109.56959 * 176.91147 * 14 13 9 28 28 H 1.09007 * 109.47892 * 182.40757 * 15 14 13 29 29 H 1.08998 * 109.48195 * 62.37576 * 15 14 13 30 30 H 1.09000 * 109.48108 * 58.82810 * 17 16 15 31 31 H 1.09000 * 109.47870 * 178.85977 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0839 -1.1944 0.0386 9 6 1.2520 -2.4987 -0.0521 10 6 0.4085 -2.6553 1.2148 11 6 0.4505 -1.5172 2.2366 12 6 1.1511 -2.8442 2.5390 13 6 0.3376 -2.5129 -1.2809 14 6 1.1986 -2.4339 -2.5453 15 6 2.1945 -3.5966 -2.5485 16 8 2.9926 -3.5419 -1.3644 17 6 2.2458 -3.6588 -0.1517 18 1 -0.4849 0.8401 -0.0004 19 1 -0.5367 -3.1831 1.0880 20 1 1.0787 -0.6568 2.0061 21 1 -0.4669 -1.2967 2.7823 22 1 0.6944 -3.4961 3.2836 23 1 2.2406 -2.8574 2.5078 24 1 -0.3358 -1.6566 -1.2442 25 1 -0.2445 -3.4343 -1.2931 26 1 1.7419 -1.4890 -2.5576 27 1 0.5602 -2.4986 -3.4264 28 1 2.8385 -3.5212 -3.4248 29 1 1.6507 -4.5409 -2.5772 30 1 1.7027 -4.6039 -0.1488 31 1 2.9268 -3.6282 0.6989 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261041656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -22.124236 kcal Electronic energy + Delta-G solvation = -13500.172318 eV Core-core repulsion = 11361.456360 eV Total energy + Delta-G solvation = -2138.715958 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.73723 -36.04353 -32.72101 -31.34855 -29.71249 -25.07241 -23.87331 -22.86984 -20.84266 -19.57004 -18.62466 -15.82713 -15.33578 -14.81545 -14.44441 -14.24652 -13.42896 -13.26497 -12.57285 -12.14069 -11.56955 -11.32843 -11.01207 -10.67620 -10.60063 -10.20734 -10.11549 -9.75282 -9.66892 -9.62113 -8.89191 -8.66353 -8.55181 -8.08138 -8.00332 -5.89760 -3.97459 3.31565 3.39291 3.43517 4.44846 4.89903 5.23380 5.33344 5.87172 6.02521 6.03051 6.16116 6.25193 6.33427 6.41540 6.51780 6.58517 6.72567 6.75482 6.81519 6.93425 7.12839 7.27823 7.36223 7.45290 7.67053 7.83588 7.89814 8.17212 8.25956 8.54969 9.03076 9.62704 11.09740 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.019736 C = 0.015013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.179298 B = 1418.413779 C = 1864.625090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.486 4.486 8 H 0.056 0.944 9 C 0.068 3.932 10 C -0.104 4.104 11 C -0.127 4.127 12 C -0.216 4.216 13 C -0.108 4.108 14 C -0.140 4.140 15 C 0.068 3.932 16 O -0.384 6.384 17 C 0.079 3.921 18 H 0.257 0.743 19 H 0.066 0.934 20 H 0.115 0.885 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.104 0.896 25 H 0.014 0.986 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.020 0.980 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -4.109 -0.831 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.075 0.925 9 C 0.068 3.932 10 C -0.123 4.123 11 C -0.164 4.164 12 C -0.254 4.254 13 C -0.146 4.146 14 C -0.177 4.177 15 C -0.009 4.009 16 O -0.303 6.303 17 C 0.002 3.998 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.133 0.867 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.651 -3.951 -0.828 4.089 hybrid contribution -0.010 0.890 -0.015 0.890 sum 0.641 -3.061 -0.843 3.239 Atomic orbital electron populations 1.69933 1.05459 1.25761 1.50271 1.24823 0.94766 0.98406 0.95475 0.86793 0.80129 0.84199 0.78124 1.20852 1.21400 1.19986 1.20935 0.92751 0.89499 1.49297 0.92542 1.18288 0.91319 0.93457 0.90176 1.22017 0.97870 1.01843 0.90589 1.22800 0.99931 0.92952 1.00733 1.22927 0.98959 1.03038 1.00430 1.21632 0.98504 1.00643 0.93834 1.22017 0.97962 0.99692 0.98050 1.22397 0.93772 0.96838 0.87931 1.87797 1.34089 1.94417 1.13970 1.22638 0.94899 0.96573 0.85653 0.93311 0.91559 0.86729 0.92574 0.91827 0.89990 0.87803 0.96773 0.90511 0.94025 0.90955 0.95220 0.96191 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.02 9.16 55.43 0.51 -22.52 16 2 C 0.07 1.71 3.22 -17.82 -0.06 1.65 16 3 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.49 -12.59 5.54 -34.44 -0.19 -12.78 16 8 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 9 C 0.07 1.61 0.36 -155.52 -0.06 1.55 16 10 C -0.10 -2.39 4.81 -90.62 -0.44 -2.83 16 11 C -0.13 -2.94 8.16 -26.69 -0.22 -3.15 16 12 C -0.22 -4.48 9.62 -26.69 -0.26 -4.74 16 13 C -0.11 -2.51 4.54 -26.55 -0.12 -2.63 16 14 C -0.14 -2.95 5.87 -26.60 -0.16 -3.11 16 15 C 0.07 1.32 6.84 37.20 0.25 1.57 16 16 O -0.38 -8.56 10.45 -35.23 -0.37 -8.93 16 17 C 0.08 1.72 5.19 37.20 0.19 1.92 16 18 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 19 H 0.07 1.50 8.06 -51.93 -0.42 1.09 16 20 H 0.11 2.91 4.98 -51.93 -0.26 2.65 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.08 1.70 7.18 -51.93 -0.37 1.33 16 24 H 0.10 2.67 5.77 -51.93 -0.30 2.37 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.66 6.98 -51.93 -0.36 1.30 16 LS Contribution 238.04 15.07 3.59 3.59 Total: -1.00 -26.30 238.04 -6.94 -33.24 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.60 Total: 1.45 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -1.04 Total: -22.54 kcal Atomic # 7 Polarization: -23.02 SS G_CDS: 0.51 Total: -22.52 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.37 Total: -8.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.30 -6.94 -33.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.112 kcal (2) G-P(sol) polarization free energy of solvation -26.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds