Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48496 * 109.47265 * 269.99447 * 3 2 1 5 5 H 1.48500 * 109.47412 * 29.99815 * 3 2 1 6 6 H 1.48496 * 109.47405 * 149.99558 * 3 2 1 7 7 C 1.37870 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00160 * 182.33217 * 7 2 1 9 9 C 1.50707 * 120.00274 * 2.33483 * 7 2 1 10 10 C 1.53002 * 109.57299 * 295.72831 * 9 7 2 11 11 C 1.53008 * 117.49485 * 1.19564 * 10 9 7 12 12 C 1.52996 * 117.49731 * 292.53888 * 10 9 7 13 13 C 1.53181 * 109.51803 * 55.88387 * 9 7 2 14 14 C 1.53174 * 109.03521 * 62.92792 * 13 9 7 15 15 C 1.53089 * 109.16351 * 56.97888 * 14 13 9 16 16 O 1.42904 * 109.41738 * 302.38795 * 15 14 13 17 17 C 1.42901 * 114.09446 * 61.15723 * 16 15 14 18 18 H 0.96997 * 119.99583 * 0.02562 * 1 2 3 19 19 H 1.08997 * 115.55078 * 146.86288 * 10 9 7 20 20 H 1.08995 * 117.50043 * 0.02562 * 11 10 9 21 21 H 1.08996 * 117.49472 * 145.02270 * 11 10 9 22 22 H 1.08998 * 117.50072 * 214.98256 * 12 10 9 23 23 H 1.09004 * 117.50359 * 359.97270 * 12 10 9 24 24 H 1.09001 * 109.54180 * 303.05806 * 13 9 7 25 25 H 1.08997 * 109.60910 * 182.83894 * 13 9 7 26 26 H 1.09001 * 109.52152 * 297.07068 * 14 13 9 27 27 H 1.09000 * 109.56959 * 176.91147 * 14 13 9 28 28 H 1.09007 * 109.47892 * 182.40757 * 15 14 13 29 29 H 1.08998 * 109.48195 * 62.37576 * 15 14 13 30 30 H 1.09000 * 109.48108 * 58.82810 * 17 16 15 31 31 H 1.09000 * 109.47870 * 178.85977 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0839 -1.1944 0.0386 9 6 1.2520 -2.4987 -0.0521 10 6 0.4085 -2.6553 1.2148 11 6 0.4505 -1.5172 2.2366 12 6 1.1511 -2.8442 2.5390 13 6 0.3376 -2.5129 -1.2809 14 6 1.1986 -2.4339 -2.5453 15 6 2.1945 -3.5966 -2.5485 16 8 2.9926 -3.5419 -1.3644 17 6 2.2458 -3.6588 -0.1517 18 1 -0.4849 0.8401 -0.0004 19 1 -0.5367 -3.1831 1.0880 20 1 1.0787 -0.6568 2.0061 21 1 -0.4669 -1.2967 2.7823 22 1 0.6944 -3.4961 3.2836 23 1 2.2406 -2.8574 2.5078 24 1 -0.3358 -1.6566 -1.2442 25 1 -0.2445 -3.4343 -1.2931 26 1 1.7419 -1.4890 -2.5576 27 1 0.5602 -2.4986 -3.4264 28 1 2.8385 -3.5212 -3.4248 29 1 1.6507 -4.5409 -2.5772 30 1 1.7027 -4.6039 -0.1488 31 1 2.9268 -3.6282 0.6989 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261041656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -36.393805 kcal Electronic energy + Delta-G solvation = -13500.791093 eV Core-core repulsion = 11361.456360 eV Total energy + Delta-G solvation = -2139.334733 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47717 -37.77658 -34.57489 -33.19298 -31.43674 -27.03073 -25.58128 -24.58789 -22.58402 -21.29122 -20.48791 -17.70065 -17.09551 -16.64891 -16.23996 -15.91683 -15.17449 -15.07019 -14.30799 -13.96463 -13.31186 -13.07567 -12.88755 -12.51687 -12.48401 -12.00923 -11.91492 -11.50508 -11.44052 -11.40653 -10.62351 -10.44278 -10.40017 -10.02655 -9.75522 -7.88524 -5.99961 1.40133 1.45329 1.51443 2.49317 3.25131 3.37073 3.47910 4.27557 4.34283 4.40481 4.52055 4.58882 4.65717 4.70041 4.85853 4.91390 5.00171 5.07491 5.11866 5.15011 5.34711 5.54977 5.58006 5.65669 5.78558 5.91241 6.04160 6.28819 6.53622 6.66187 7.02739 7.61465 9.08371 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.019736 C = 0.015013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.179298 B = 1418.413779 C = 1864.625090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.040 3.960 3 Si 0.920 3.080 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.491 4.491 8 H 0.035 0.965 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.141 4.141 12 C -0.188 4.188 13 C -0.108 4.108 14 C -0.136 4.136 15 C 0.066 3.934 16 O -0.402 6.402 17 C 0.082 3.918 18 H 0.254 0.746 19 H 0.068 0.932 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -5.238 -0.968 5.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.060 3.940 10 C -0.136 4.136 11 C -0.178 4.178 12 C -0.225 4.225 13 C -0.146 4.146 14 C -0.174 4.174 15 C -0.011 4.011 16 O -0.321 6.321 17 C 0.006 3.994 18 H 0.063 0.937 19 H 0.086 0.914 20 H 0.107 0.893 21 H 0.078 0.922 22 H 0.111 0.889 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.750 -5.081 -0.967 5.226 hybrid contribution -0.048 1.246 0.010 1.247 sum 0.702 -3.835 -0.956 4.015 Atomic orbital electron populations 1.70029 1.05985 1.25798 1.50742 1.25176 0.95245 1.00087 0.95464 0.86160 0.79182 0.82151 0.77686 1.21113 1.21221 1.20307 1.20958 0.91750 0.90976 1.49275 0.94684 1.18339 0.91751 0.93106 0.90758 1.22021 0.98341 1.02077 0.91119 1.22645 1.00250 0.93031 1.01903 1.22937 0.98783 1.01293 0.99485 1.21552 0.98390 0.99901 0.94774 1.21955 0.98234 0.99112 0.98102 1.22582 0.93865 0.96868 0.87762 1.87772 1.35102 1.94506 1.14765 1.22571 0.94487 0.96525 0.85828 0.93662 0.91394 0.89308 0.92172 0.88901 0.90146 0.90665 0.95516 0.93567 0.91686 0.88422 0.92990 0.94402 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.94 9.16 21.45 0.20 -46.74 16 2 C 0.04 2.07 3.22 84.65 0.27 2.35 16 3 Si 0.92 42.85 29.54 68.60 2.03 44.88 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.49 -25.47 5.54 25.60 0.14 -25.33 16 8 H 0.03 1.93 7.75 -2.91 -0.02 1.91 16 9 C 0.06 2.82 0.36 -52.84 -0.02 2.80 16 10 C -0.12 -5.20 4.81 -10.79 -0.05 -5.25 16 11 C -0.14 -6.42 8.16 30.62 0.25 -6.17 16 12 C -0.19 -7.39 9.62 30.62 0.29 -7.09 16 13 C -0.11 -4.90 4.54 30.71 0.14 -4.77 16 14 C -0.14 -5.56 5.87 30.68 0.18 -5.38 16 15 C 0.07 2.37 6.84 72.01 0.49 2.87 16 16 O -0.40 -17.16 10.45 -148.98 -1.56 -18.72 16 17 C 0.08 3.45 5.19 72.01 0.37 3.83 16 18 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 19 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 20 H 0.09 4.52 4.98 -2.39 -0.01 4.51 16 21 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 22 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 23 H 0.08 3.19 7.18 -2.39 -0.02 3.17 16 24 H 0.08 3.86 5.77 -2.39 -0.01 3.85 16 25 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 2.15 7.39 -2.39 -0.02 2.13 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 3.13 6.98 -2.39 -0.02 3.11 16 Total: -1.00 -54.68 238.04 3.83 -50.85 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.10 Total: 11.88 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 2.07 Total: -42.14 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.20 Total: -46.74 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.56 Total: -18.72 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -54.68 3.83 -50.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -54.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds