Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00207 * 2 1 4 4 H 1.48506 * 109.47149 * 270.00344 * 3 2 1 5 5 H 1.48504 * 109.47098 * 29.99978 * 3 2 1 6 6 H 1.48493 * 109.47281 * 150.00088 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99882 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00194 * 179.97438 * 7 2 1 10 10 H 1.09000 * 115.54963 * 39.51822 * 9 7 2 11 11 C 1.52873 * 117.48823 * 185.13933 * 9 7 2 12 12 C 1.53564 * 60.19796 * 107.52201 * 11 9 7 13 13 C 1.51057 * 117.72241 * 252.77701 * 12 11 9 14 14 C 1.54558 * 109.69127 * 302.56591 * 13 12 11 15 15 C 1.47033 * 109.93703 * 288.23840 * 14 13 12 16 16 O 1.42864 * 113.58455 * 60.82411 * 15 14 13 17 17 C 1.40349 * 112.60503 * 271.33172 * 16 15 14 18 18 C 1.54419 * 110.32598 * 98.15912 * 17 16 15 19 19 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 20 20 H 1.09000 * 117.48079 * 215.07537 * 11 9 7 21 21 H 1.09003 * 117.47478 * 359.97438 * 11 9 7 22 22 H 1.09004 * 109.43453 * 62.63581 * 13 12 11 23 23 H 1.08999 * 109.43506 * 182.53996 * 13 12 11 24 24 H 1.08997 * 109.38846 * 48.38179 * 14 13 12 25 25 H 1.08994 * 109.38946 * 168.18904 * 14 13 12 26 26 H 1.09003 * 108.65477 * 181.87950 * 15 14 13 27 27 H 1.08998 * 108.66113 * 299.76005 * 15 14 13 28 28 H 1.09000 * 109.32874 * 218.41533 * 17 16 15 29 29 H 1.08997 * 109.33295 * 338.06901 * 17 16 15 30 30 H 1.09007 * 109.23754 * 200.31998 * 18 17 16 31 31 H 1.08997 * 109.24407 * 80.92231 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.9819 -0.4355 0.6246 11 6 4.2171 -2.5447 -0.1232 12 6 4.2202 -1.5718 -1.3113 13 6 3.3521 -1.9115 -2.5000 14 6 3.7461 -3.3000 -3.0528 15 6 5.0509 -3.2199 -3.7257 16 8 6.1143 -2.8103 -2.8641 17 6 6.2646 -1.4156 -2.8180 18 6 5.5625 -0.8415 -1.5682 19 1 -0.4850 0.8401 0.0004 20 1 5.1515 -2.6752 0.4226 21 1 3.5913 -3.4336 -0.2026 22 1 2.3064 -1.9268 -2.1927 23 1 3.4908 -1.1597 -3.2770 24 1 3.8060 -4.0131 -2.2306 25 1 2.9922 -3.6326 -3.7662 26 1 5.2925 -4.2005 -4.1359 27 1 4.9757 -2.5095 -4.5490 28 1 7.3255 -1.1681 -2.7814 29 1 5.8220 -0.9753 -3.7115 30 1 5.3701 0.2206 -1.7205 31 1 6.2117 -0.9676 -0.7017 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261144508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = -33.350853 kcal Electronic energy + Delta-G solvation = -13071.159859 eV Core-core repulsion = 10931.957078 eV Total energy + Delta-G solvation = -2139.202781 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.26416 -36.45414 -32.67381 -32.28887 -29.89439 -25.85478 -25.72228 -23.26493 -21.12961 -19.83680 -17.80607 -16.80602 -16.04978 -15.85489 -14.69852 -14.13551 -13.57263 -13.22165 -12.88582 -12.66980 -12.48222 -11.94783 -11.35476 -11.06720 -10.88581 -10.68726 -10.37503 -10.17923 -10.05440 -9.78572 -9.33132 -9.14852 -8.81653 -8.52365 -8.14696 -6.11373 -4.06371 3.29732 3.36502 3.39629 4.25933 4.41536 4.79588 5.23685 5.32293 5.50999 5.55426 5.58298 5.68948 5.80670 5.91710 6.11082 6.14191 6.24552 6.32858 6.42313 6.49512 6.63339 6.75855 6.80598 7.06609 7.12056 7.30512 7.52995 7.66992 7.77507 8.54099 8.93159 9.52144 11.00269 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.046397 B = 0.012751 C = 0.011656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.341710 B = 2195.429837 C = 2401.587688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.478 4.478 8 H 0.074 0.926 9 C -0.021 4.021 10 H 0.066 0.934 11 C -0.174 4.174 12 C -0.150 4.150 13 C -0.072 4.072 14 C -0.152 4.152 15 C 0.068 3.932 16 O -0.368 6.368 17 C 0.064 3.936 18 C -0.109 4.109 19 H 0.265 0.735 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -2.155 -6.395 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.092 0.908 9 C -0.040 4.040 10 H 0.083 0.917 11 C -0.212 4.212 12 C -0.151 4.151 13 C -0.109 4.109 14 C -0.189 4.189 15 C -0.008 4.008 16 O -0.286 6.286 17 C -0.013 4.013 18 C -0.147 4.147 19 H 0.074 0.926 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.111 0.889 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.611 -2.160 -6.290 11.687 hybrid contribution 0.242 1.093 -0.137 1.128 sum 9.852 -1.067 -6.426 11.811 Atomic orbital electron populations 1.69906 1.06346 1.27125 1.50164 1.25001 0.94604 0.99190 0.94041 0.86736 0.80335 0.83321 0.78644 1.20198 1.21642 1.18870 1.20496 0.87487 0.94268 1.49221 0.90776 1.20712 0.95155 0.94133 0.93958 0.91652 1.22878 1.00951 0.95109 1.02227 1.21734 0.96180 1.05497 0.91721 1.20821 1.01620 0.93446 0.95022 1.21360 0.96415 1.00135 1.01011 1.21433 0.88405 0.99445 0.91520 1.87510 1.51286 1.21556 1.68234 1.22469 0.99113 0.82077 0.97674 1.22282 0.95781 0.98732 0.97894 0.92560 0.91446 0.90442 0.88887 0.93801 0.91085 0.91707 0.91139 0.94016 0.91203 0.93550 0.92328 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.57 27.78 -169.99 -4.72 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.22 6.10 56.52 0.34 -5.87 16 7 C -0.48 -13.28 7.85 -34.44 -0.27 -13.55 16 8 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 9 C -0.02 -0.50 4.30 -91.49 -0.39 -0.89 16 10 H 0.07 1.59 6.19 -51.93 -0.32 1.27 16 11 C -0.17 -3.73 8.84 -26.50 -0.23 -3.96 16 12 C -0.15 -3.14 1.67 -153.81 -0.26 -3.39 16 13 C -0.07 -1.44 5.11 -26.89 -0.14 -1.58 16 14 C -0.15 -2.53 5.75 -28.77 -0.17 -2.69 16 15 C 0.07 1.02 5.99 34.30 0.21 1.23 16 16 O -0.37 -6.20 10.13 -33.74 -0.34 -6.55 16 17 C 0.06 1.00 6.35 37.90 0.24 1.24 16 18 C -0.11 -1.98 5.91 -24.95 -0.15 -2.12 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 21 H 0.08 1.68 7.44 -51.93 -0.39 1.29 16 22 H 0.09 2.17 6.27 -51.93 -0.33 1.84 16 23 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16 24 H 0.07 1.25 6.80 -51.93 -0.35 0.90 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.57 7.17 -51.93 -0.37 0.20 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.67 7.00 -51.93 -0.36 0.31 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 LS Contribution 242.97 15.07 3.66 3.66 Total: -1.00 -29.31 242.97 -6.55 -35.86 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.66 Total: 0.11 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -1.26 Total: -23.72 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.21 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.34 Total: -6.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.31 -6.55 -35.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds