Wall clock time and date at job start Mon Mar 30 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.38351 * 127.14553 * 270.03064 * 3 2 1 5 5 C 1.39826 * 126.57407 * 0.02562 * 4 3 2 6 6 H 1.08002 * 119.99417 * 359.95539 * 5 4 3 7 7 C 1.40115 * 120.00205 * 179.97438 * 5 4 3 8 8 N 1.30788 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00223 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46936 * 90.00295 * 9 7 5 11 11 H 1.48502 * 109.47497 * 210.00337 * 9 7 5 12 12 H 1.48499 * 109.47101 * 330.00902 * 9 7 5 13 13 N 1.33060 * 106.85411 * 180.02562 * 4 3 2 14 14 N 1.28513 * 109.70836 * 359.97438 * 13 4 3 15 15 C 1.32314 * 110.20776 * 0.02562 * 14 13 4 16 16 N 1.37447 * 126.24798 * 179.73078 * 15 14 13 17 17 C 1.46501 * 119.99536 * 0.02824 * 16 15 14 18 18 H 1.09000 * 109.46655 * 299.99349 * 1 2 3 19 19 H 1.08999 * 109.47287 * 59.99127 * 1 2 3 20 20 H 1.08994 * 109.46691 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46655 * 240.00651 * 2 1 3 22 22 H 1.08993 * 109.47568 * 120.00531 * 2 1 3 23 23 H 0.97002 * 120.00282 * 179.97438 * 8 7 5 24 24 H 0.97001 * 120.00819 * 180.02562 * 16 15 14 25 25 H 1.09005 * 109.47249 * 60.00268 * 17 16 15 26 26 H 1.08998 * 109.47426 * 179.97438 * 17 16 15 27 27 H 1.09002 * 109.47392 * 299.99743 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2963 2.1691 -1.1028 5 6 2.1645 1.7999 -2.4450 6 1 1.8149 0.8107 -2.7010 7 6 2.4863 2.7132 -3.4577 8 7 2.9104 3.9109 -3.1475 9 14 2.3109 2.2198 -5.2507 10 1 0.9442 2.5553 -5.7250 11 1 3.3119 2.9535 -6.0663 12 1 2.5370 0.7584 -5.3864 13 7 2.7130 3.3455 -0.6414 14 7 2.7091 3.3330 0.6437 15 6 2.2938 2.1579 1.0881 16 7 2.1681 1.7853 2.4051 17 6 2.5093 2.7320 3.4699 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3632 -1.0276 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.8935 -0.5139 0.8899 23 1 3.1336 4.5431 -3.8486 24 1 1.8535 0.8957 2.6297 25 1 1.8785 3.6169 3.3852 26 1 2.3468 2.2620 4.4398 27 1 3.5560 3.0216 3.3769 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261224044.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:02 Heat of formation + Delta-G solvation = 52.950375 kcal Electronic energy + Delta-G solvation = -12471.614337 eV Core-core repulsion = 10264.906266 eV Total energy + Delta-G solvation = -2206.708071 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.42166 -36.65953 -35.88344 -35.15874 -31.09019 -30.48579 -27.49618 -26.35338 -24.54874 -22.28172 -21.18524 -18.89870 -18.22179 -17.14573 -16.38400 -15.91705 -15.74659 -15.06006 -14.57286 -14.47730 -13.58526 -13.21546 -13.10831 -12.90992 -12.86679 -12.60828 -12.12755 -11.89142 -11.42438 -11.38027 -10.69857 -10.28730 -10.12414 -8.54991 -8.37840 -6.32791 1.39383 1.44558 1.60794 1.90157 1.93456 2.32378 2.72867 3.06076 3.51904 3.92183 4.27320 4.38291 4.52149 4.75029 4.77653 4.81673 5.01073 5.04283 5.10897 5.26404 5.47616 5.62247 5.83842 6.38640 6.72704 6.90954 6.98797 7.32038 8.59484 9.05090 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047761 B = 0.011985 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.111706 B = 2335.662150 C = 2835.678480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.115 3.885 3 N -0.542 5.542 4 C 0.306 3.694 5 C -0.477 4.477 6 H 0.096 0.904 7 C 0.026 3.974 8 N -0.800 5.800 9 Si 1.002 2.998 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.249 1.249 13 N -0.394 5.394 14 N -0.412 5.412 15 C 0.362 3.638 16 N -0.711 5.711 17 C 0.127 3.873 18 H 0.050 0.950 19 H 0.038 0.962 20 H 0.105 0.895 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.278 0.722 24 H 0.410 0.590 25 H 0.031 0.969 26 H 0.115 0.885 27 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -10.334 5.352 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 N -0.248 5.248 4 C 0.056 3.944 5 C -0.518 4.518 6 H 0.114 0.886 7 C -0.192 4.192 8 N -0.427 5.427 9 Si 0.821 3.179 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.172 1.172 13 N -0.236 5.236 14 N -0.258 5.258 15 C 0.004 3.996 16 N -0.360 5.360 17 C -0.018 4.018 18 H 0.069 0.931 19 H 0.057 0.943 20 H 0.124 0.876 21 H 0.104 0.896 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.247 0.753 25 H 0.050 0.950 26 H 0.134 0.866 27 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.535 -8.473 5.431 10.668 hybrid contribution -0.506 -1.348 -0.610 1.564 sum -4.041 -9.821 4.822 11.664 Atomic orbital electron populations 1.22061 0.94077 1.03698 1.01420 1.21674 0.95774 0.79208 1.04111 1.46396 1.59255 1.14163 1.04982 1.21607 0.96840 0.86649 0.89304 1.18431 1.45169 1.01528 0.86656 0.88622 1.26886 0.92496 0.93814 1.06044 1.70191 1.30439 1.05794 1.36285 0.84933 0.78750 0.79722 0.74462 1.18830 1.19908 1.17174 1.75288 1.30312 1.19009 0.98960 1.74329 1.27197 1.17322 1.06928 1.21054 1.04468 0.90116 0.83918 1.42384 1.77866 1.17703 0.98011 1.21329 0.99034 0.92490 0.88916 0.93130 0.94295 0.87648 0.89638 0.88218 0.91166 0.75327 0.95002 0.86630 0.94958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 10.24 71.98 0.74 -3.68 15 2 C 0.12 3.84 6.56 86.38 0.57 4.40 15 3 N -0.54 -25.89 2.85 -523.09 -1.49 -27.39 15 4 C 0.31 18.00 7.53 133.26 1.00 19.00 15 5 C -0.48 -26.51 9.05 23.11 0.21 -26.30 15 6 H 0.10 4.73 7.30 -2.91 -0.02 4.71 15 7 C 0.03 1.42 5.50 85.30 0.47 1.88 15 8 N -0.80 -47.86 11.94 21.86 0.26 -47.60 15 9 Si 1.00 39.72 29.56 68.60 2.03 41.74 15 10 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 11 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 12 H -0.25 -9.07 7.11 99.48 0.71 -8.37 15 13 N -0.39 -25.80 10.48 -55.01 -0.58 -26.38 15 14 N -0.41 -24.55 11.87 -58.10 -0.69 -25.24 15 15 C 0.36 17.61 8.60 260.18 2.24 19.85 15 16 N -0.71 -24.75 5.82 -370.29 -2.16 -26.90 15 17 C 0.13 3.70 11.02 127.77 1.41 5.11 15 18 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.09 2.83 7.53 -2.39 -0.02 2.81 15 22 H 0.10 2.58 7.61 -2.39 -0.02 2.57 15 23 H 0.28 15.11 8.30 -92.71 -0.77 14.34 15 24 H 0.41 10.92 8.22 -92.71 -0.76 10.16 15 25 H 0.03 1.03 8.14 -2.38 -0.02 1.01 15 26 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 15 Total: -1.00 -80.01 240.16 4.42 -75.59 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.42 Total: 15.91 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.63 Total: 20.26 kcal Atomic # 7 Polarization: -148.86 SS G_CDS: -4.65 Total: -153.51 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -80.01 4.42 -75.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224044.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.541 kcal (2) G-P(sol) polarization free energy of solvation -80.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds