Wall clock time and date at job start Mon Mar 30 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.84544 * 2 1 4 4 H 1.07994 * 119.99904 * 246.10760 * 3 2 1 5 5 C 1.37873 * 119.99927 * 66.11149 * 3 2 1 6 6 N 1.31517 * 120.00363 * 356.66385 * 5 3 2 7 7 Si 1.86798 * 120.00155 * 176.39153 * 5 3 2 8 8 H 1.48503 * 109.47397 * 89.99406 * 7 5 3 9 9 H 1.48501 * 109.47579 * 209.99907 * 7 5 3 10 10 H 1.48508 * 109.47122 * 330.00037 * 7 5 3 11 11 C 1.54169 * 109.85778 * 120.95082 * 2 1 3 12 12 C 1.55004 * 104.26631 * 121.36654 * 11 2 1 13 13 C 1.53894 * 101.92160 * 19.78971 * 12 11 2 14 14 C 1.52639 * 115.55464 * 195.00787 * 13 12 11 15 15 C 1.53990 * 86.73806 * 217.58219 * 14 13 12 16 16 C 1.52643 * 115.54283 * 93.98873 * 13 12 11 17 17 O 1.43101 * 105.11406 * 324.51211 * 13 12 11 18 18 H 1.08996 * 109.47361 * 54.40260 * 1 2 3 19 19 H 1.09001 * 109.46836 * 174.40090 * 1 2 3 20 20 H 1.08998 * 109.47017 * 294.39444 * 1 2 3 21 21 H 0.96999 * 119.99320 * 5.59848 * 6 5 3 22 22 H 1.09003 * 110.47037 * 240.06102 * 11 2 1 23 23 H 1.09002 * 110.47550 * 2.66877 * 11 2 1 24 24 H 1.08998 * 110.93913 * 137.95080 * 12 11 2 25 25 H 1.09001 * 110.93773 * 261.59217 * 12 11 2 26 26 H 1.08999 * 113.67018 * 332.03990 * 14 13 12 27 27 H 1.08997 * 113.67160 * 103.12176 * 14 13 12 28 28 H 1.09000 * 113.57751 * 269.98523 * 15 14 13 29 29 H 1.08995 * 113.58142 * 139.19396 * 15 14 13 30 30 H 1.08994 * 113.67363 * 256.88977 * 16 13 12 31 31 H 1.09004 * 113.66689 * 27.87954 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4175 0.0000 4 1 2.5812 1.7968 -0.8551 5 6 1.8208 2.2301 1.0917 6 7 1.1077 1.7902 2.1054 7 14 2.5409 3.9531 1.1345 8 1 1.5728 4.9092 0.5396 9 1 2.8172 4.3395 2.5415 10 1 3.8054 3.9806 0.3562 11 6 2.0537 -0.7457 1.2435 12 6 2.9189 -1.8940 0.6642 13 6 3.2102 -1.3855 -0.7588 14 6 3.7458 -2.4301 -1.7345 15 6 4.6435 -1.3138 -2.2997 16 6 4.5209 -0.6219 -0.9295 17 8 2.0214 -0.6972 -1.1598 18 1 -0.3634 0.5982 -0.8356 19 1 -0.3633 -1.0228 -0.1003 20 1 -0.3633 0.4244 0.9359 21 1 0.8056 0.8686 2.1221 22 1 2.6625 -0.0822 1.8577 23 1 1.2238 -1.1492 1.8238 24 1 3.8415 -2.0114 1.2325 25 1 2.3585 -2.8285 0.6375 26 1 4.3002 -3.2354 -1.2525 27 1 2.9995 -2.7917 -2.4417 28 1 4.1828 -0.7540 -3.1136 29 1 5.6558 -1.6442 -2.5325 30 1 4.3926 0.4585 -0.9947 31 1 5.2937 -0.9151 -0.2189 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439129.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:56 Heat of formation + Delta-G solvation = -48.356124 kcal Electronic energy + Delta-G solvation = -13362.344260 eV Core-core repulsion = 11222.490802 eV Total energy + Delta-G solvation = -2139.853458 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36105 -37.79014 -35.04883 -32.47958 -30.80202 -27.36493 -26.44656 -25.79696 -22.92047 -21.58785 -20.05415 -19.20961 -16.68748 -16.38141 -16.15519 -15.83438 -15.31633 -14.59935 -14.18334 -13.56856 -13.47902 -13.37192 -12.98269 -12.91053 -12.61284 -12.49576 -12.00713 -11.95435 -11.85355 -11.77199 -11.35601 -10.91708 -10.65139 -10.45502 -9.92929 -8.51211 -6.29321 1.51319 1.58564 1.77010 2.54669 3.01978 3.22106 3.75602 3.77259 3.96766 4.01212 4.29314 4.31087 4.44867 4.60174 4.70928 4.79628 4.81985 4.87178 4.88765 5.02521 5.05768 5.13415 5.21910 5.29805 5.46765 5.55828 5.58391 6.11009 6.11365 6.59002 6.70138 7.48411 8.82945 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.014500 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.549261 B = 1930.600245 C = 2242.374218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.202 3.798 3 C -0.606 4.606 4 H 0.035 0.965 5 C -0.017 4.017 6 N -0.937 5.937 7 Si 1.108 2.892 8 H -0.278 1.278 9 H -0.280 1.280 10 H -0.278 1.278 11 C -0.132 4.132 12 C -0.133 4.133 13 C 0.074 3.926 14 C -0.117 4.117 15 C -0.125 4.125 16 C -0.159 4.159 17 O -0.381 6.381 18 H 0.033 0.967 19 H 0.045 0.955 20 H 0.056 0.944 21 H 0.272 0.728 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -7.088 -3.793 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 C -0.644 4.644 4 H 0.053 0.947 5 C -0.217 4.217 6 N -0.576 5.576 7 Si 0.932 3.068 8 H -0.203 1.203 9 H -0.206 1.206 10 H -0.203 1.203 11 C -0.170 4.170 12 C -0.170 4.170 13 C 0.034 3.966 14 C -0.154 4.154 15 C -0.162 4.162 16 C -0.196 4.196 17 O -0.301 6.301 18 H 0.052 0.948 19 H 0.064 0.936 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.006 -5.699 -3.107 8.843 hybrid contribution -0.397 -0.997 -0.555 1.208 sum 5.609 -6.696 -3.663 9.471 Atomic orbital electron populations 1.21915 0.97126 0.99164 1.00769 1.19975 0.90998 0.90776 0.81916 1.22478 1.39356 0.98631 1.03915 0.94700 1.26866 0.94584 1.08093 0.92130 1.70872 1.34058 1.19172 1.33521 0.83030 0.76080 0.71434 0.76288 1.20345 1.20568 1.20335 1.22929 0.98804 0.96761 0.98502 1.22893 1.00303 0.97790 0.96058 1.22709 0.86549 0.93624 0.93728 1.22922 0.98594 0.96318 0.97547 1.22750 1.00644 0.97017 0.95776 1.23295 0.97661 0.99876 0.98812 1.88450 1.39792 1.66318 1.35540 0.94806 0.93591 0.92553 0.91441 0.93272 0.93241 0.89674 0.90133 0.86382 0.91163 0.91802 0.88832 0.93563 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.40 71.98 0.60 -5.97 16 2 C 0.20 10.43 0.89 -11.14 -0.01 10.42 16 3 C -0.61 -34.58 7.48 25.60 0.19 -34.38 16 4 H 0.03 2.08 7.42 -2.91 -0.02 2.06 16 5 C -0.02 -0.99 4.84 84.65 0.41 -0.58 16 6 N -0.94 -55.00 12.54 21.45 0.27 -54.74 16 7 Si 1.11 50.81 29.90 68.60 2.05 52.86 16 8 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 C -0.13 -6.18 4.53 31.68 0.14 -6.03 16 12 C -0.13 -4.97 6.48 31.58 0.20 -4.76 16 13 C 0.07 2.89 1.10 -10.74 -0.01 2.87 16 14 C -0.12 -3.43 7.64 30.81 0.24 -3.19 16 15 C -0.12 -3.73 8.09 31.25 0.25 -3.47 16 16 C -0.16 -5.84 7.48 30.81 0.23 -5.61 16 17 O -0.38 -18.68 10.65 -148.98 -1.59 -20.27 16 18 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 19 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 20 H 0.06 2.92 5.84 -2.39 -0.01 2.91 16 21 H 0.27 15.69 3.98 -92.71 -0.37 15.32 16 22 H 0.05 2.55 6.75 -2.39 -0.02 2.54 16 23 H 0.05 2.25 7.42 -2.39 -0.02 2.23 16 24 H 0.08 2.79 7.96 -2.39 -0.02 2.77 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.12 2.68 8.14 -2.39 -0.02 2.67 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.04 7.11 -2.39 -0.02 2.03 16 31 H 0.10 3.08 8.01 -2.39 -0.02 3.06 16 Total: -1.00 -63.92 242.82 4.48 -59.45 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.49 Total: 13.41 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 2.25 Total: -50.71 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.27 Total: -54.74 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.59 Total: -20.27 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -63.92 4.48 -59.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439129.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.090 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds