Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.99127 * 2 1 4 4 H 1.07995 * 120.00275 * 239.63215 * 3 2 1 5 5 C 1.37882 * 119.99556 * 59.62767 * 3 2 1 6 6 N 1.31513 * 119.99975 * 0.02562 * 5 3 2 7 7 Si 1.86801 * 119.99724 * 179.97438 * 5 3 2 8 8 H 1.48507 * 109.46937 * 60.00374 * 7 5 3 9 9 H 1.48496 * 109.47362 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47157 * 300.00800 * 7 5 3 11 11 C 1.54099 * 109.87946 * 238.91822 * 2 1 3 12 12 C 1.54814 * 104.18737 * 238.54726 * 11 2 1 13 13 C 1.54994 * 102.08950 * 339.11583 * 12 11 2 14 14 H 1.08997 * 110.75659 * 278.46066 * 13 12 11 15 15 C 1.53003 * 110.61783 * 155.52378 * 13 12 11 16 16 C 1.52994 * 117.50356 * 253.22536 * 15 13 12 17 17 C 1.52999 * 117.49959 * 184.56203 * 15 13 12 18 18 O 1.43745 * 109.87899 * 121.08510 * 2 1 3 19 19 H 1.08994 * 109.47217 * 300.37048 * 1 2 3 20 20 H 1.09006 * 109.47124 * 60.36732 * 1 2 3 21 21 H 1.08997 * 109.46948 * 180.36480 * 1 2 3 22 22 H 0.97003 * 119.99162 * 179.97438 * 6 5 3 23 23 H 1.09001 * 110.48650 * 357.22185 * 11 2 1 24 24 H 1.08997 * 110.48782 * 119.86780 * 11 2 1 25 25 H 1.09000 * 110.90572 * 220.92657 * 12 11 2 26 26 H 1.08992 * 110.94098 * 97.32730 * 12 11 2 27 27 H 1.09004 * 115.54539 * 38.89595 * 15 13 12 28 28 H 1.09005 * 117.49678 * 0.02562 * 16 15 13 29 29 H 1.08996 * 117.50406 * 145.01964 * 16 15 13 30 30 H 1.09003 * 117.49944 * 214.97804 * 17 15 13 31 31 H 1.08998 * 117.50084 * 0.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4163 0.0000 4 1 2.6742 1.7621 -0.8069 5 6 1.7135 2.2705 1.0303 6 7 0.9479 1.8491 2.0131 7 14 2.3527 4.0257 1.0307 8 1 1.8719 4.7278 -0.1864 9 1 1.8571 4.7327 2.2388 10 1 3.8376 4.0118 1.0400 11 6 2.0540 -0.7481 -1.2411 12 6 2.9195 -1.8914 -0.6576 13 6 3.2379 -1.3641 0.7647 14 1 4.0690 -0.6594 0.7383 15 6 3.5475 -2.5244 1.7127 16 6 2.4878 -2.8871 2.7550 17 6 3.7798 -2.1891 3.1873 18 8 2.0188 -0.6979 1.1577 19 1 -0.3633 0.5195 0.8866 20 1 -0.3634 0.5081 -0.8933 21 1 -0.3633 -1.0276 0.0065 22 1 0.7149 2.4501 2.7380 23 1 1.2246 -1.1548 -1.8198 24 1 2.6619 -0.0858 -1.8574 25 1 3.8332 -2.0223 -1.2374 26 1 2.3546 -2.8223 -0.6099 27 1 4.1311 -3.3390 1.2838 28 1 1.5699 -2.2993 2.7651 29 1 2.3745 -3.9402 3.0122 30 1 4.5158 -2.7835 3.7287 31 1 3.7117 -1.1420 3.4822 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306466230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = -43.724931 kcal Electronic energy + Delta-G solvation = -13132.308088 eV Core-core repulsion = 10992.655453 eV Total energy + Delta-G solvation = -2139.652635 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.31052 -37.43895 -34.63392 -32.62093 -31.48430 -27.30682 -26.82919 -23.32399 -22.89716 -21.22475 -20.84711 -18.42926 -16.91208 -16.78132 -16.19764 -15.61368 -15.25102 -14.43259 -14.20857 -13.65831 -13.19336 -12.85369 -12.80161 -12.71960 -12.40935 -12.27890 -12.19420 -11.92915 -11.66988 -11.32687 -11.07526 -10.86346 -10.67517 -10.55658 -9.73718 -8.00324 -6.24127 1.39527 1.40284 1.47622 2.42646 3.00035 3.15927 3.59010 3.84593 4.09795 4.21698 4.24592 4.38696 4.46971 4.77326 4.85534 4.86290 4.90366 4.99338 5.08517 5.09587 5.21898 5.25211 5.33512 5.44847 5.50076 5.60298 5.72897 6.09424 6.33904 6.72333 7.05758 7.51711 8.98984 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.036239 B = 0.013861 C = 0.012173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.463696 B = 2019.533502 C = 2299.633512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.208 3.792 3 C -0.560 4.560 4 H 0.049 0.951 5 C 0.033 3.967 6 N -0.888 5.888 7 Si 0.944 3.056 8 H -0.269 1.269 9 H -0.285 1.285 10 H -0.276 1.276 11 C -0.141 4.141 12 C -0.132 4.132 13 C 0.095 3.905 14 H 0.034 0.966 15 C -0.148 4.148 16 C -0.165 4.165 17 C -0.178 4.178 18 O -0.375 6.375 19 H 0.057 0.943 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.256 0.744 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -7.861 -2.014 9.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.170 3.830 3 C -0.598 4.598 4 H 0.067 0.933 5 C -0.169 4.169 6 N -0.525 5.525 7 Si 0.770 3.230 8 H -0.194 1.194 9 H -0.210 1.210 10 H -0.201 1.201 11 C -0.179 4.179 12 C -0.170 4.170 13 C 0.037 3.963 14 H 0.052 0.948 15 C -0.166 4.166 16 C -0.202 4.202 17 C -0.215 4.215 18 O -0.295 6.295 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.155 0.845 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.893 -7.805 -1.643 8.875 hybrid contribution 0.233 1.423 -0.015 1.442 sum 4.126 -6.382 -1.658 7.779 Atomic orbital electron populations 1.21659 0.96856 0.98201 1.01282 1.19721 0.91500 0.89708 0.82070 1.21803 1.32497 0.97590 1.07882 0.93292 1.25696 0.94571 1.01571 0.95042 1.70106 1.35869 1.36121 1.10423 0.85856 0.78724 0.80868 0.77546 1.19384 1.21032 1.20114 1.22993 0.99366 0.97044 0.98523 1.22990 1.00215 0.98119 0.95633 1.22374 0.89157 0.91630 0.93177 0.94812 1.22419 1.04224 0.99642 0.90336 1.22782 0.93448 1.00954 1.03037 1.22882 1.00637 1.00546 0.97395 1.88948 1.37532 1.66874 1.36131 0.92443 0.93861 0.95178 0.93452 0.91405 0.92346 0.89556 0.90313 0.84524 0.91024 0.86752 0.86392 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.45 71.98 0.61 -5.51 16 2 C 0.21 10.58 0.74 -11.17 -0.01 10.57 16 3 C -0.56 -31.43 8.19 25.60 0.21 -31.22 16 4 H 0.05 2.71 7.33 -2.91 -0.02 2.69 16 5 C 0.03 1.89 5.26 84.66 0.45 2.34 16 6 N -0.89 -52.67 10.95 21.45 0.23 -52.44 16 7 Si 0.94 44.53 29.54 68.60 2.03 46.55 16 8 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 C -0.14 -5.86 6.26 31.59 0.20 -5.66 16 12 C -0.13 -4.67 6.59 31.90 0.21 -4.46 16 13 C 0.09 3.96 3.64 31.28 0.11 4.08 16 14 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.15 -4.98 5.72 -10.79 -0.06 -5.04 16 16 C -0.17 -5.60 9.90 30.62 0.30 -5.30 16 17 C -0.18 -5.93 10.23 30.62 0.31 -5.62 16 18 O -0.37 -19.36 8.51 -148.98 -1.27 -20.62 16 19 H 0.06 3.22 6.08 -2.39 -0.01 3.21 16 20 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 24 H 0.06 2.42 7.39 -2.39 -0.02 2.40 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.08 2.53 8.06 -2.39 -0.02 2.51 16 27 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.07 3.01 7.10 -2.38 -0.02 2.99 16 29 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.17 252.41 4.41 -58.76 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.09 Total: 13.57 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 2.33 Total: -45.82 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.23 Total: -52.44 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.27 Total: -20.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.17 4.41 -58.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.037 kcal (2) G-P(sol) polarization free energy of solvation -63.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds