Wall clock time and date at job start Mon Mar 30 2020 02:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46967 * 299.99707 * 3 2 1 6 6 H 1.48499 * 109.47105 * 59.99519 * 3 2 1 7 7 C 1.37881 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00215 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.55390 * 302.87984 * 9 7 2 11 11 C 1.54992 * 110.62062 * 179.97438 * 9 7 2 12 12 C 1.54808 * 102.09663 * 204.47557 * 11 9 7 13 13 C 1.54103 * 104.18578 * 20.88343 * 12 11 9 14 14 H 1.09002 * 109.87915 * 242.60324 * 13 12 11 15 15 C 1.53005 * 109.87979 * 121.60090 * 13 12 11 16 16 C 1.53779 * 113.61439 * 279.44275 * 15 13 12 17 17 C 1.53951 * 87.01825 * 220.04875 * 16 15 13 18 18 C 1.53774 * 87.11184 * 25.36189 * 17 16 15 19 19 O 1.43750 * 107.41924 * 2.10301 * 13 12 11 20 20 H 0.97000 * 119.99799 * 0.02562 * 1 2 3 21 21 H 1.09007 * 110.90687 * 86.27698 * 11 9 7 22 22 H 1.09000 * 110.91017 * 322.67922 * 11 9 7 23 23 H 1.08992 * 110.49201 * 262.20655 * 12 11 9 24 24 H 1.09007 * 110.48703 * 139.55607 * 12 11 9 25 25 H 1.08995 * 112.84504 * 50.63762 * 15 13 12 26 26 H 1.08997 * 113.61752 * 334.57102 * 16 15 13 27 27 H 1.09008 * 113.61176 * 105.46665 * 16 15 13 28 28 H 1.09004 * 113.53759 * 270.81318 * 17 16 15 29 29 H 1.08993 * 113.74511 * 139.95016 * 17 16 15 30 30 H 1.09008 * 113.61633 * 220.08879 * 18 17 16 31 31 H 1.09003 * 113.61267 * 89.18739 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5796 -2.5533 0.8574 11 6 2.2345 -3.6972 0.0005 12 6 1.3754 -4.8220 -0.6266 13 6 0.2646 -4.0703 -1.3855 14 1 -0.7080 -4.3188 -0.9607 15 6 0.2975 -4.4509 -2.8671 16 6 1.3689 -3.6976 -3.6730 17 6 0.3293 -3.5921 -4.8036 18 6 -0.7510 -3.7130 -3.7161 19 8 0.5181 -2.6632 -1.2366 20 1 -0.4850 0.8401 -0.0004 21 1 2.5324 -3.9559 1.0167 22 1 3.1072 -3.4841 -0.6168 23 1 0.9460 -5.4530 0.1515 24 1 1.9725 -5.4184 -1.3166 25 1 0.3086 -5.5290 -3.0269 26 1 1.6437 -2.7352 -3.2413 27 1 2.2335 -4.3100 -3.9291 28 1 0.3501 -4.4354 -5.4941 29 1 0.3307 -2.6284 -5.3126 30 1 -1.5956 -4.3378 -4.0070 31 1 -1.0570 -2.7548 -3.2962 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306885799.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:48 Heat of formation + Delta-G solvation = -39.881440 kcal Electronic energy + Delta-G solvation = -12962.077114 eV Core-core repulsion = 10822.591146 eV Total energy + Delta-G solvation = -2139.485968 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.02697 -36.60326 -32.54505 -30.79628 -28.98202 -25.66941 -24.97497 -23.09534 -20.69229 -19.86999 -18.52382 -16.60850 -15.21347 -15.05876 -14.79361 -14.29729 -13.67220 -12.88242 -12.42943 -11.86263 -11.76610 -11.66202 -11.65560 -10.94838 -10.79724 -10.54272 -10.36205 -10.07973 -10.02886 -9.85136 -9.48378 -9.22137 -9.01806 -8.56673 -7.93098 -6.00438 -4.12352 3.30747 3.38655 3.42447 4.43352 5.02683 5.15406 5.28774 5.31333 5.42197 5.59862 5.72880 5.81354 5.90835 6.09424 6.20359 6.33516 6.35698 6.42963 6.48986 6.68306 6.70726 6.77695 6.82478 6.91397 6.95617 7.23669 7.57201 7.90973 8.28136 8.65397 9.01315 9.58178 11.07676 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038708 B = 0.012114 C = 0.010593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.189306 B = 2310.828089 C = 2642.714752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.208 3.792 10 H 0.027 0.973 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.077 3.923 14 H 0.044 0.956 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.130 4.130 19 O -0.349 6.349 20 H 0.260 0.740 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -7.478 -4.656 8.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.153 3.847 10 H 0.044 0.956 11 C -0.183 4.183 12 C -0.188 4.188 13 C 0.018 3.982 14 H 0.062 0.938 15 C -0.129 4.129 16 C -0.163 4.163 17 C -0.183 4.183 18 C -0.167 4.167 19 O -0.269 6.269 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.614 -7.201 -4.796 8.674 hybrid contribution 0.418 0.601 0.124 0.743 sum 1.032 -6.600 -4.672 8.152 Atomic orbital electron populations 1.70043 1.06040 1.26460 1.47667 1.25084 0.94770 0.99296 0.93755 0.86568 0.80258 0.83711 0.77623 1.19615 1.20849 1.20934 1.21038 0.92702 0.89805 1.52793 0.91877 1.20700 0.87661 0.92179 0.84198 0.95576 1.23165 0.99616 0.96381 0.99189 1.22921 0.98155 0.98539 0.99161 1.22316 0.96074 0.86577 0.93273 0.93816 1.22683 0.97801 0.97958 0.94411 1.22871 0.95349 1.02345 0.95736 1.22817 0.98132 1.00847 0.96476 1.22852 0.95690 1.01560 0.96647 1.89272 1.76539 1.17455 1.43599 0.92997 0.92565 0.91899 0.92532 0.92199 0.90124 0.87871 0.93086 0.91440 0.92003 0.92871 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.91 13.13 55.43 0.73 -25.18 16 2 C 0.08 2.18 5.44 -17.82 -0.10 2.08 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.89 8.81 -34.44 -0.30 -15.20 16 8 H 0.06 1.74 7.77 -52.48 -0.41 1.33 16 9 C 0.21 5.44 3.09 -26.83 -0.08 5.36 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.15 -3.11 6.55 -24.73 -0.16 -3.27 16 12 C -0.15 -2.78 6.63 -25.20 -0.17 -2.95 16 13 C 0.08 1.58 3.42 -26.15 -0.09 1.49 16 14 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.11 -1.93 3.35 -89.81 -0.30 -2.23 16 16 C -0.13 -2.23 7.49 -25.83 -0.19 -2.43 16 17 C -0.15 -2.28 8.09 -25.83 -0.21 -2.49 16 18 C -0.13 -2.23 7.55 -25.93 -0.20 -2.42 16 19 O -0.35 -8.99 8.87 -35.23 -0.31 -9.30 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 22 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 1.00 7.70 -51.92 -0.40 0.60 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.21 6.99 -51.93 -0.36 1.85 16 27 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.09 1.84 7.80 -51.93 -0.40 1.44 16 LS Contribution 253.18 15.07 3.82 3.82 Total: -1.00 -29.68 253.18 -7.52 -37.21 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.93 Total: -1.01 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.80 Total: -22.05 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.18 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.31 Total: -9.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.68 -7.52 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885799.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.676 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds