Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00127 * 2 1 4 4 H 1.48493 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46967 * 299.99707 * 3 2 1 6 6 H 1.48499 * 109.47105 * 59.99519 * 3 2 1 7 7 C 1.37881 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00215 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.55390 * 302.87984 * 9 7 2 11 11 C 1.54992 * 110.62062 * 179.97438 * 9 7 2 12 12 C 1.54808 * 102.09663 * 204.47557 * 11 9 7 13 13 C 1.54103 * 104.18578 * 20.88343 * 12 11 9 14 14 H 1.09002 * 109.87915 * 242.60324 * 13 12 11 15 15 C 1.53005 * 109.87979 * 121.60090 * 13 12 11 16 16 C 1.53779 * 113.61439 * 279.44275 * 15 13 12 17 17 C 1.53951 * 87.01825 * 220.04875 * 16 15 13 18 18 C 1.53774 * 87.11184 * 25.36189 * 17 16 15 19 19 O 1.43750 * 107.41924 * 2.10301 * 13 12 11 20 20 H 0.97000 * 119.99799 * 0.02562 * 1 2 3 21 21 H 1.09007 * 110.90687 * 86.27698 * 11 9 7 22 22 H 1.09000 * 110.91017 * 322.67922 * 11 9 7 23 23 H 1.08992 * 110.49201 * 262.20655 * 12 11 9 24 24 H 1.09007 * 110.48703 * 139.55607 * 12 11 9 25 25 H 1.08995 * 112.84504 * 50.63762 * 15 13 12 26 26 H 1.08997 * 113.61752 * 334.57102 * 16 15 13 27 27 H 1.09008 * 113.61176 * 105.46665 * 16 15 13 28 28 H 1.09004 * 113.53759 * 270.81318 * 17 16 15 29 29 H 1.08993 * 113.74511 * 139.95016 * 17 16 15 30 30 H 1.09008 * 113.61633 * 220.08879 * 18 17 16 31 31 H 1.09003 * 113.61267 * 89.18739 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5796 -2.5533 0.8574 11 6 2.2345 -3.6972 0.0005 12 6 1.3754 -4.8220 -0.6266 13 6 0.2646 -4.0703 -1.3855 14 1 -0.7080 -4.3188 -0.9607 15 6 0.2975 -4.4509 -2.8671 16 6 1.3689 -3.6976 -3.6730 17 6 0.3293 -3.5921 -4.8036 18 6 -0.7510 -3.7130 -3.7161 19 8 0.5181 -2.6632 -1.2366 20 1 -0.4850 0.8401 -0.0004 21 1 2.5324 -3.9559 1.0167 22 1 3.1072 -3.4841 -0.6168 23 1 0.9460 -5.4530 0.1515 24 1 1.9725 -5.4184 -1.3166 25 1 0.3086 -5.5290 -3.0269 26 1 1.6437 -2.7352 -3.2413 27 1 2.2335 -4.3100 -3.9291 28 1 0.3501 -4.4354 -5.4941 29 1 0.3307 -2.6284 -5.3126 30 1 -1.5956 -4.3378 -4.0070 31 1 -1.0570 -2.7548 -3.2962 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306885799.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -57.511615 kcal Electronic energy + Delta-G solvation = -12962.841616 eV Core-core repulsion = 10822.591146 eV Total energy + Delta-G solvation = -2140.250470 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60835 -38.21566 -34.67894 -32.55841 -30.79209 -27.52060 -26.37790 -24.75954 -22.50762 -21.51771 -19.94130 -18.71571 -16.94487 -16.76334 -16.35953 -16.09623 -15.39841 -14.64207 -14.18015 -13.64397 -13.31099 -13.26092 -13.12589 -12.85872 -12.37883 -12.32106 -12.09364 -11.99312 -11.57408 -11.31036 -11.03640 -10.90036 -10.72392 -10.69695 -9.86489 -8.17792 -6.37439 1.38472 1.39757 1.52445 2.39236 3.04680 3.65276 3.74697 3.90462 4.03092 4.05860 4.18881 4.28571 4.37838 4.71174 4.74325 4.85553 4.92179 4.99058 5.02847 5.09429 5.16138 5.17332 5.24134 5.35677 5.48596 5.55022 5.74384 5.84329 6.17513 6.61883 6.98467 7.38002 8.91346 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038708 B = 0.012114 C = 0.010593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.189306 B = 2310.828089 C = 2642.714752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.197 3.803 10 H -0.010 1.010 11 C -0.137 4.137 12 C -0.137 4.137 13 C 0.062 3.938 14 H 0.036 0.964 15 C -0.104 4.104 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.136 4.136 19 O -0.380 6.380 20 H 0.262 0.738 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -8.970 -5.743 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.142 3.858 10 H 0.007 0.993 11 C -0.175 4.175 12 C -0.175 4.175 13 C 0.003 3.997 14 H 0.054 0.946 15 C -0.122 4.122 16 C -0.168 4.168 17 C -0.168 4.168 18 C -0.173 4.173 19 O -0.299 6.299 20 H 0.070 0.930 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.629 -8.705 -5.880 10.630 hybrid contribution 0.060 1.020 0.472 1.125 sum 1.688 -7.686 -5.408 9.548 Atomic orbital electron populations 1.70182 1.07783 1.27404 1.49067 1.25982 0.95621 1.03195 0.93284 0.85461 0.79258 0.78895 0.77740 1.18449 1.20697 1.20014 1.21445 0.93038 0.91322 1.52562 0.91748 1.20593 0.88099 0.93726 0.83388 0.99273 1.23029 0.98709 0.95372 1.00412 1.22880 0.97049 0.97680 0.99859 1.22632 0.96557 0.84419 0.96094 0.94577 1.22781 0.97603 0.99939 0.91874 1.22757 0.96847 1.00485 0.96716 1.22810 0.95836 1.02115 0.96005 1.22789 0.97185 0.99981 0.97380 1.89206 1.76812 1.21085 1.42840 0.92956 0.91125 0.92107 0.90512 0.89279 0.86268 0.92569 0.90751 0.87769 0.92588 0.90230 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.13 21.45 0.28 -56.03 16 2 C 0.02 1.21 5.44 84.66 0.46 1.67 16 3 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -31.77 8.81 25.60 0.23 -31.55 16 8 H 0.06 3.61 7.77 -2.91 -0.02 3.59 16 9 C 0.20 10.68 3.09 30.53 0.09 10.77 16 10 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 11 C -0.14 -5.77 6.55 31.89 0.21 -5.57 16 12 C -0.14 -4.77 6.63 31.58 0.21 -4.56 16 13 C 0.06 2.50 3.42 30.97 0.11 2.60 16 14 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.10 -3.40 3.35 -10.27 -0.03 -3.44 16 16 C -0.13 -4.43 7.49 31.18 0.23 -4.19 16 17 C -0.13 -3.78 8.09 31.18 0.25 -3.52 16 18 C -0.14 -4.49 7.55 31.12 0.23 -4.26 16 19 O -0.38 -20.21 8.87 -148.98 -1.32 -21.54 16 20 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 22 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.09 2.60 7.70 -2.38 -0.02 2.58 16 25 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.06 2.45 6.99 -2.39 -0.02 2.43 16 27 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 2.02 7.80 -2.39 -0.02 2.00 16 Total: -1.00 -66.70 253.18 4.06 -62.65 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.08 Total: 9.89 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 1.99 Total: -42.04 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.32 Total: -21.54 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.70 4.06 -62.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885799.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.134 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds