Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47059 * 240.00216 * 3 2 1 5 5 H 1.48497 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47082 * 120.00289 * 3 2 1 7 7 C 1.37869 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00482 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99847 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.45002 * 33.35686 * 9 7 2 11 11 C 1.55925 * 110.39849 * 270.96402 * 9 7 2 12 12 H 1.08996 * 116.52995 * 80.82228 * 11 9 7 13 13 C 1.55920 * 104.50232 * 311.48342 * 11 9 7 14 14 C 1.54586 * 104.64632 * 289.72557 * 13 11 9 15 15 C 1.55921 * 104.64049 * 359.97438 * 14 13 11 16 16 H 1.09000 * 115.91656 * 199.96869 * 15 14 13 17 17 C 1.56949 * 100.65247 * 326.21852 * 15 14 13 18 18 C 1.54586 * 110.40241 * 155.74326 * 9 7 2 19 19 H 1.08994 * 110.40184 * 359.97438 * 18 9 7 20 20 C 1.52993 * 110.40036 * 237.58296 * 18 9 7 21 21 O 1.42901 * 109.47655 * 69.77949 * 20 18 9 22 22 H 0.97000 * 119.99967 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.40410 * 170.92939 * 13 11 9 24 24 H 1.08999 * 110.39992 * 48.51429 * 13 11 9 25 25 H 1.08999 * 110.40245 * 118.78989 * 14 13 11 26 26 H 1.09000 * 110.40037 * 241.09114 * 14 13 11 27 27 H 1.08999 * 112.02654 * 170.31078 * 17 15 14 28 28 H 1.08997 * 112.02948 * 296.75305 * 17 15 14 29 29 H 1.09003 * 109.47388 * 189.78056 * 20 18 9 30 30 H 1.08999 * 109.47563 * 309.77610 * 20 18 9 31 31 H 0.96696 * 114.00572 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.3216 -2.4023 -0.5617 11 6 0.9585 -2.9578 1.4607 12 1 0.1057 -2.4930 1.9554 13 6 2.3282 -2.8235 2.1936 14 6 3.2025 -3.9506 1.5978 15 6 2.2784 -4.6601 0.5615 16 1 2.5704 -5.6708 0.2764 17 6 0.8845 -4.5141 1.2679 18 6 2.1253 -3.6262 -0.5964 19 1 3.0999 -3.2362 -0.8897 20 6 1.4240 -4.2679 -1.7951 21 8 1.3977 -3.3422 -2.8834 22 1 -0.4850 0.8400 0.0004 23 1 2.2009 -2.9682 3.2665 24 1 2.7737 -1.8496 1.9909 25 1 4.0778 -3.5307 1.1022 26 1 3.5067 -4.6482 2.3781 27 1 0.0625 -4.8064 0.6145 28 1 0.8510 -5.0443 2.2196 29 1 1.9649 -5.1656 -2.0948 30 1 0.4035 -4.5338 -1.5196 31 1 0.9664 -3.6826 -3.6791 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307040329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = -58.733083 kcal Electronic energy + Delta-G solvation = -13212.026437 eV Core-core repulsion = 11071.723000 eV Total energy + Delta-G solvation = -2140.303437 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40119 -35.81186 -32.55084 -30.18711 -28.47824 -27.27678 -25.00436 -22.95480 -20.19996 -18.89648 -17.71507 -16.63177 -16.18101 -15.11263 -14.35175 -14.04622 -13.84777 -13.17681 -12.34390 -11.78654 -11.56519 -10.99642 -10.83190 -10.61622 -10.47771 -10.36867 -10.22573 -10.03767 -9.86393 -9.71946 -9.31509 -8.94702 -8.71135 -8.59925 -8.17829 -5.87435 -3.85620 3.39770 3.43938 3.47152 4.54785 4.91918 5.35653 5.40147 5.57027 5.71412 5.89689 5.99024 6.10671 6.18202 6.29259 6.38296 6.51858 6.54302 6.60664 6.73265 6.88498 6.95517 7.09401 7.11224 7.47289 7.63644 7.66036 7.94417 8.12942 8.35689 8.61420 9.17647 9.74001 11.22899 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.015607 C = 0.012725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.096781 B = 1793.674133 C = 2199.802417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.060 3.940 10 H 0.051 0.949 11 C -0.090 4.090 12 H 0.079 0.921 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.103 4.103 16 H 0.077 0.923 17 C -0.132 4.132 18 C -0.085 4.085 19 H 0.069 0.931 20 C 0.089 3.911 21 O -0.557 6.557 22 H 0.258 0.742 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.036 0.964 31 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -8.244 0.132 8.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.041 3.959 10 H 0.070 0.930 11 C -0.109 4.109 12 H 0.098 0.902 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.121 4.121 16 H 0.095 0.905 17 C -0.170 4.170 18 C -0.104 4.104 19 H 0.087 0.913 20 C 0.011 3.989 21 O -0.359 6.359 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.457 -7.718 0.577 8.120 hybrid contribution 0.171 0.513 -0.387 0.665 sum 2.628 -7.205 0.190 7.672 Atomic orbital electron populations 1.69935 1.05853 1.26254 1.51150 1.24943 0.94761 0.98781 0.95331 0.86799 0.79711 0.83812 0.78493 1.20376 1.21493 1.20416 1.20997 0.92337 0.90421 1.49095 0.93102 1.19712 0.95405 0.90833 0.89905 0.93048 1.23635 0.95467 0.91430 1.00403 0.90234 1.22595 0.96813 0.99547 0.96178 1.22470 0.97912 0.97252 0.97062 1.23506 0.96129 0.96394 0.96105 0.90472 1.23651 0.96002 0.99083 0.98252 1.22502 1.00365 0.96260 0.91276 0.91294 1.22246 0.98381 0.90276 0.87959 1.86721 1.82016 1.43322 1.23890 0.93230 0.94944 0.89635 0.92562 0.93761 0.92629 0.93239 0.95871 0.94570 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 12.96 55.43 0.72 -25.81 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.88 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.49 -13.60 6.20 -34.44 -0.21 -13.81 16 8 H 0.05 1.41 7.41 -52.49 -0.39 1.02 16 9 C 0.06 1.51 2.18 -89.37 -0.20 1.31 16 10 H 0.05 1.47 7.19 -51.93 -0.37 1.09 16 11 C -0.09 -2.04 4.92 -85.33 -0.42 -2.46 16 12 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 13 C -0.11 -2.39 6.00 -24.34 -0.15 -2.53 16 14 C -0.11 -2.02 6.21 -24.34 -0.15 -2.17 16 15 C -0.10 -1.88 4.59 -85.33 -0.39 -2.27 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.13 -2.49 6.34 -22.43 -0.14 -2.63 16 18 C -0.09 -1.83 2.22 -88.20 -0.20 -2.02 16 19 H 0.07 1.59 7.27 -51.93 -0.38 1.22 16 20 C 0.09 1.69 6.17 37.15 0.23 1.92 16 21 O -0.56 -11.28 13.56 -35.23 -0.48 -11.76 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 2.00 6.10 -51.93 -0.32 1.68 16 25 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.02 7.35 -51.93 -0.38 0.64 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.67 7.34 -51.93 -0.38 0.29 16 31 H 0.36 5.16 9.12 45.56 0.42 5.57 16 LS Contribution 244.43 15.07 3.68 3.68 Total: -1.00 -30.54 244.43 -6.70 -37.24 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.88 Total: 2.70 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -1.72 Total: -22.99 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.72 Total: -25.81 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.48 Total: -11.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.54 -6.70 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307040329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.492 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds