Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47059 * 240.00216 * 3 2 1 5 5 H 1.48497 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47082 * 120.00289 * 3 2 1 7 7 C 1.37869 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00482 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99847 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.45002 * 33.35686 * 9 7 2 11 11 C 1.55925 * 110.39849 * 270.96402 * 9 7 2 12 12 H 1.08996 * 116.52995 * 80.82228 * 11 9 7 13 13 C 1.55920 * 104.50232 * 311.48342 * 11 9 7 14 14 C 1.54586 * 104.64632 * 289.72557 * 13 11 9 15 15 C 1.55921 * 104.64049 * 359.97438 * 14 13 11 16 16 H 1.09000 * 115.91656 * 199.96869 * 15 14 13 17 17 C 1.56949 * 100.65247 * 326.21852 * 15 14 13 18 18 C 1.54586 * 110.40241 * 155.74326 * 9 7 2 19 19 H 1.08994 * 110.40184 * 359.97438 * 18 9 7 20 20 C 1.52993 * 110.40036 * 237.58296 * 18 9 7 21 21 O 1.42901 * 109.47655 * 69.77949 * 20 18 9 22 22 H 0.97000 * 119.99967 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.40410 * 170.92939 * 13 11 9 24 24 H 1.08999 * 110.39992 * 48.51429 * 13 11 9 25 25 H 1.08999 * 110.40245 * 118.78989 * 14 13 11 26 26 H 1.09000 * 110.40037 * 241.09114 * 14 13 11 27 27 H 1.08999 * 112.02654 * 170.31078 * 17 15 14 28 28 H 1.08997 * 112.02948 * 296.75305 * 17 15 14 29 29 H 1.09003 * 109.47388 * 189.78056 * 20 18 9 30 30 H 1.08999 * 109.47563 * 309.77610 * 20 18 9 31 31 H 0.96696 * 114.00572 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.3216 -2.4023 -0.5617 11 6 0.9585 -2.9578 1.4607 12 1 0.1057 -2.4930 1.9554 13 6 2.3282 -2.8235 2.1936 14 6 3.2025 -3.9506 1.5978 15 6 2.2784 -4.6601 0.5615 16 1 2.5704 -5.6708 0.2764 17 6 0.8845 -4.5141 1.2679 18 6 2.1253 -3.6262 -0.5964 19 1 3.0999 -3.2362 -0.8897 20 6 1.4240 -4.2679 -1.7951 21 8 1.3977 -3.3422 -2.8834 22 1 -0.4850 0.8400 0.0004 23 1 2.2009 -2.9682 3.2665 24 1 2.7737 -1.8496 1.9909 25 1 4.0778 -3.5307 1.1022 26 1 3.5067 -4.6482 2.3781 27 1 0.0625 -4.8064 0.6145 28 1 0.8510 -5.0443 2.2196 29 1 1.9649 -5.1656 -2.0948 30 1 0.4035 -4.5338 -1.5196 31 1 0.9664 -3.6826 -3.6791 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307040329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = -79.757835 kcal Electronic energy + Delta-G solvation = -13212.938138 eV Core-core repulsion = 11071.723000 eV Total energy + Delta-G solvation = -2141.215138 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.05256 -37.34352 -34.67413 -31.84047 -30.29870 -28.91288 -26.75942 -24.82026 -21.83218 -20.52939 -19.45687 -18.37714 -18.00667 -16.85597 -16.24226 -15.66234 -15.53624 -14.77848 -14.08049 -13.64485 -13.34781 -12.89361 -12.60067 -12.40405 -12.26929 -12.05615 -11.91222 -11.63235 -11.59544 -11.31545 -10.98573 -10.73326 -10.56739 -10.45262 -10.20336 -8.05471 -6.08243 1.38035 1.39977 1.46672 2.45723 3.23877 3.51557 3.84544 3.94684 4.22646 4.43647 4.49617 4.61305 4.67988 4.75330 4.81998 4.88729 5.02370 5.11542 5.13415 5.23438 5.29397 5.48079 5.55426 5.67971 5.74724 5.84163 5.94690 6.06183 6.50666 7.03075 7.11335 7.53395 9.04580 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.015607 C = 0.012725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.096781 B = 1793.674133 C = 2199.802417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.495 4.495 8 H 0.043 0.957 9 C 0.054 3.946 10 H 0.005 0.995 11 C -0.106 4.106 12 H 0.049 0.951 13 C -0.113 4.113 14 C -0.106 4.106 15 C -0.085 4.085 16 H 0.120 0.880 17 C -0.119 4.119 18 C -0.088 4.088 19 H 0.046 0.954 20 C 0.089 3.911 21 O -0.591 6.591 22 H 0.256 0.744 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -10.294 0.535 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.036 3.964 10 H 0.024 0.976 11 C -0.125 4.125 12 H 0.068 0.932 13 C -0.151 4.151 14 C -0.143 4.143 15 C -0.103 4.103 16 H 0.138 0.862 17 C -0.156 4.156 18 C -0.107 4.107 19 H 0.064 0.936 20 C 0.012 3.988 21 O -0.398 6.398 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.662 -9.781 0.969 10.489 hybrid contribution -0.216 1.157 -0.535 1.293 sum 3.446 -8.624 0.434 9.297 Atomic orbital electron populations 1.70071 1.07197 1.26715 1.52977 1.25679 0.95551 1.02097 0.95680 0.85866 0.78577 0.80078 0.78699 1.20149 1.21196 1.19426 1.21342 0.92141 0.92097 1.47708 0.93855 1.19640 0.93791 0.91601 0.91388 0.97631 1.23520 0.95554 0.94761 0.98632 0.93222 1.22513 0.96008 0.99153 0.97399 1.22461 0.97038 0.96815 0.97982 1.23558 0.95455 0.97340 0.93993 0.86183 1.23561 0.96662 0.95513 0.99845 1.22425 0.98414 0.96289 0.93580 0.93563 1.22270 0.98793 0.90901 0.86878 1.86652 1.82646 1.45023 1.25467 0.93508 0.93027 0.93099 0.93235 0.90170 0.92366 0.90410 0.91898 0.94324 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 12.96 21.44 0.28 -57.13 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.94 46.19 29.54 68.60 2.03 48.22 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.49 -28.29 6.20 25.60 0.16 -28.13 16 8 H 0.04 2.47 7.41 -2.91 -0.02 2.45 16 9 C 0.05 2.79 2.18 -9.99 -0.02 2.77 16 10 H 0.01 0.32 7.19 -2.39 -0.02 0.30 16 11 C -0.11 -4.79 4.92 -7.37 -0.04 -4.83 16 12 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.11 -4.63 6.00 32.14 0.19 -4.44 16 14 C -0.11 -3.55 6.21 32.15 0.20 -3.35 16 15 C -0.09 -2.79 4.59 -7.36 -0.03 -2.82 16 16 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 17 C -0.12 -4.11 6.34 33.38 0.21 -3.90 16 18 C -0.09 -3.67 2.22 -9.22 -0.02 -3.69 16 19 H 0.05 2.11 7.27 -2.39 -0.02 2.09 16 20 C 0.09 3.19 6.17 71.98 0.44 3.63 16 21 O -0.59 -23.62 13.56 -148.98 -2.02 -25.64 16 22 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.05 2.41 6.10 -2.39 -0.01 2.39 16 25 H 0.05 1.73 7.84 -2.39 -0.02 1.72 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.99 7.35 -2.39 -0.02 1.97 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.36 7.34 -2.39 -0.02 1.34 16 31 H 0.38 10.58 9.12 -74.06 -0.68 9.91 16 Total: -1.00 -68.32 244.43 2.27 -66.05 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.43 Total: 12.39 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 1.56 Total: -43.89 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.13 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -2.02 Total: -25.64 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.32 2.27 -66.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307040329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.711 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds