Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48494 * 109.47296 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47171 * 119.99903 * 3 2 1 7 7 C 1.37870 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00146 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.41645 * 302.50010 * 9 7 2 11 11 C 1.54853 * 110.46601 * 65.14082 * 9 7 2 12 12 C 1.56803 * 103.06595 * 156.55573 * 11 9 7 13 13 H 1.09003 * 111.11433 * 203.87971 * 12 11 9 14 14 O 1.42901 * 110.44929 * 80.85519 * 12 11 9 15 15 C 1.54194 * 103.63375 * 322.52498 * 12 11 9 16 16 H 1.09000 * 111.38310 * 260.96120 * 15 12 11 17 17 C 1.54190 * 108.91522 * 137.72655 * 15 12 11 18 18 C 1.54852 * 104.28333 * 221.21305 * 17 15 12 19 19 C 1.54859 * 102.74113 * 38.10381 * 18 17 15 20 20 C 1.54199 * 104.39151 * 321.83288 * 19 18 17 21 21 H 1.09005 * 111.38044 * 262.08450 * 20 19 18 22 22 H 0.96996 * 120.00003 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.76168 * 275.11150 * 11 9 7 24 24 H 1.08995 * 110.76593 * 38.30704 * 11 9 7 25 25 H 0.96691 * 114.00205 * 65.93946 * 14 12 11 26 26 H 1.09004 * 110.46945 * 102.50856 * 17 15 12 27 27 H 1.09006 * 110.46759 * 339.91569 * 17 15 12 28 28 H 1.08998 * 110.75896 * 279.79050 * 18 17 15 29 29 H 1.09005 * 110.76396 * 156.41659 * 18 17 15 30 30 H 1.09002 * 110.47157 * 80.59656 * 19 18 17 31 31 H 1.09001 * 110.47081 * 203.06945 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5538 0.8618 11 6 0.4527 -2.6634 -1.3161 12 6 0.2694 -4.2167 -1.4281 13 1 0.1093 -4.5196 -2.4628 14 8 -0.8148 -4.6520 -0.6052 15 6 1.6053 -4.7792 -0.9021 16 1 2.2723 -5.0499 -1.7206 17 6 1.3142 -5.9883 0.0093 18 6 2.2948 -5.8174 1.1956 19 6 2.2936 -4.2854 1.4216 20 6 2.2326 -3.6884 0.0012 21 1 3.2227 -3.3990 -0.3511 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5134 -2.1635 -1.2471 24 1 1.0229 -2.2835 -2.1638 25 1 -1.6799 -4.3275 -0.8903 26 1 1.5138 -6.9207 -0.5190 27 1 0.2826 -5.9614 0.3605 28 1 3.2913 -6.1674 0.9266 29 1 1.9267 -6.3385 2.0794 30 1 1.4188 -3.9859 1.9989 31 1 3.2077 -3.9739 1.9271 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307046387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = -92.198120 kcal Electronic energy + Delta-G solvation = -13096.027012 eV Core-core repulsion = 10954.272422 eV Total energy + Delta-G solvation = -2141.754590 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56351 -36.66890 -35.39015 -33.01222 -30.66114 -27.77503 -27.42105 -24.65462 -21.65609 -21.12955 -19.44815 -18.76118 -17.59533 -16.76400 -16.22588 -16.11257 -15.00476 -14.38360 -14.09014 -13.79353 -13.51297 -13.06960 -12.91232 -12.77295 -12.33986 -12.09765 -11.74630 -11.59731 -11.43948 -11.18899 -11.02079 -10.91870 -10.70543 -10.55331 -10.25389 -8.10574 -6.19897 1.39478 1.40777 1.48271 2.43030 3.18721 3.48014 3.75469 3.98095 4.02014 4.41074 4.46107 4.56721 4.76021 4.81437 4.92953 4.97158 5.01391 5.05884 5.24564 5.28137 5.35753 5.40308 5.51629 5.64106 5.68237 5.79597 5.95229 6.05620 6.43020 6.90574 7.04723 7.46800 8.97551 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.048255 B = 0.012051 C = 0.010527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.112791 B = 2322.963799 C = 2659.201810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.057 3.943 10 H -0.005 1.005 11 C -0.123 4.123 12 C 0.101 3.899 13 H 0.067 0.933 14 O -0.567 6.567 15 C -0.089 4.089 16 H 0.090 0.910 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.087 4.087 21 H 0.058 0.942 22 H 0.259 0.741 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.381 0.619 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 -9.471 -1.994 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.039 3.961 10 H 0.013 0.987 11 C -0.162 4.162 12 C 0.042 3.958 13 H 0.085 0.915 14 O -0.374 6.374 15 C -0.107 4.107 16 H 0.108 0.892 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.106 4.106 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.230 0.770 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.230 -9.647 -1.671 10.041 hybrid contribution -0.261 1.771 -0.227 1.804 sum 1.969 -7.876 -1.898 8.337 Atomic orbital electron populations 1.70085 1.07186 1.27055 1.51638 1.25758 0.95666 1.02308 0.95017 0.85737 0.78486 0.79361 0.78840 1.19491 1.21027 1.19822 1.21627 0.92825 0.92374 1.50209 0.93191 1.19374 0.92293 0.91725 0.92752 0.98703 1.23266 0.99758 0.94179 0.98976 1.22924 0.87659 0.92849 0.92363 0.91496 1.86377 1.18240 1.75266 1.57543 1.22521 0.94302 0.95582 0.98307 0.89167 1.22268 1.00389 0.96390 0.95949 1.22489 0.99773 0.94559 0.98428 1.22371 1.00029 0.96246 0.96425 1.22459 0.98207 0.95069 0.94827 0.92336 0.93239 0.94062 0.94090 0.77043 0.90750 0.90692 0.90569 0.91178 0.94195 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 12.28 21.45 0.26 -54.45 16 2 C 0.01 0.62 5.35 84.65 0.45 1.07 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.21 8.49 25.60 0.22 -29.99 16 8 H 0.05 2.79 7.56 -2.91 -0.02 2.76 16 9 C 0.06 2.95 2.26 -10.50 -0.02 2.92 16 10 H -0.01 -0.31 7.21 -2.39 -0.02 -0.32 16 11 C -0.12 -5.83 5.52 32.56 0.18 -5.65 16 12 C 0.10 3.73 4.23 32.33 0.14 3.87 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 O -0.57 -20.38 10.96 -148.98 -1.63 -22.01 16 15 C -0.09 -3.15 3.69 -9.34 -0.03 -3.18 16 16 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.11 -3.51 6.22 31.63 0.20 -3.31 16 18 C -0.12 -3.45 6.90 31.86 0.22 -3.23 16 19 C -0.11 -4.34 6.35 31.64 0.20 -4.14 16 20 C -0.09 -3.69 3.26 -9.33 -0.03 -3.72 16 21 H 0.06 2.51 7.73 -2.38 -0.02 2.49 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.04 2.12 7.54 -2.39 -0.02 2.10 16 24 H 0.04 1.98 8.05 -2.39 -0.02 1.96 16 25 H 0.38 11.09 9.12 -74.06 -0.68 10.41 16 26 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.07 2.59 5.85 -2.38 -0.01 2.58 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.71 7.21 -2.39 -0.02 1.69 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.29 243.79 2.60 -60.68 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.43 Total: 14.54 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 1.52 Total: -45.36 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.26 Total: -54.45 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.63 Total: -22.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.29 2.60 -60.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307046387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.515 kcal (2) G-P(sol) polarization free energy of solvation -63.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds