Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53952 * 113.58821 * 2 1 4 4 C 1.52878 * 86.81037 * 220.65558 * 3 2 1 5 5 C 1.52864 * 88.01329 * 24.92634 * 4 3 2 6 6 C 1.54091 * 115.02442 * 268.10927 * 4 3 2 7 7 C 1.55459 * 100.80277 * 265.34531 * 6 4 3 8 8 C 1.54457 * 102.35907 * 326.80200 * 7 6 4 9 9 H 1.08999 * 109.83240 * 261.85410 * 8 7 6 10 10 C 1.50707 * 109.82798 * 140.87514 * 8 7 6 11 11 H 1.07994 * 120.00508 * 0.42540 * 10 8 7 12 12 C 1.37879 * 119.99771 * 180.42013 * 10 8 7 13 13 N 1.31516 * 119.99987 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 120.00024 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47175 * 90.00722 * 14 12 10 16 16 H 1.48507 * 109.47065 * 210.00273 * 14 12 10 17 17 H 1.48498 * 109.47261 * 330.00237 * 14 12 10 18 18 O 1.42645 * 116.02260 * 143.08937 * 4 3 2 19 19 H 1.08993 * 109.47303 * 60.00003 * 1 2 3 20 20 H 1.09001 * 109.46553 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46684 * 299.99324 * 1 2 3 22 22 H 1.08999 * 112.89173 * 131.16943 * 2 1 3 23 23 H 1.09003 * 113.65229 * 106.17683 * 3 2 1 24 24 H 1.08995 * 113.74189 * 335.14460 * 3 2 1 25 25 H 1.09010 * 113.65432 * 89.55119 * 5 4 3 26 26 H 1.08994 * 113.66242 * 220.59134 * 5 4 3 27 27 H 1.09001 * 111.15577 * 23.23615 * 6 4 3 28 28 H 1.09001 * 111.14598 * 147.46254 * 6 4 3 29 29 H 1.09010 * 110.82773 * 208.58707 * 7 6 4 30 30 H 1.08993 * 111.00305 * 85.10096 * 7 6 4 31 31 H 0.97001 * 120.00001 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4109 0.0000 4 6 3.1732 0.8695 -0.9945 5 6 2.1461 -0.1881 -1.3982 6 6 4.4646 0.3163 -0.3615 7 6 5.3888 1.5633 -0.4477 8 6 4.9118 2.2387 -1.7523 9 1 5.5747 1.9662 -2.5736 10 6 4.8995 3.7356 -1.5781 11 1 5.2059 4.1726 -0.6392 12 6 4.4971 4.5473 -2.6175 13 7 4.1236 4.0152 -3.7607 14 14 4.4824 6.4027 -2.4018 15 1 5.7989 6.9585 -2.8060 16 1 3.4151 6.9913 -3.2503 17 1 4.2215 6.7335 -0.9778 18 8 3.5832 1.7692 -2.0228 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.9540 -0.6610 0.7559 23 1 2.5760 1.7003 0.9589 24 1 1.4920 2.1753 -0.4194 25 1 1.4909 0.1262 -2.2108 26 1 2.5759 -1.1770 -1.5574 27 1 4.2993 0.0201 0.6744 28 1 4.8656 -0.5117 -0.9461 29 1 6.4347 1.2660 -0.5252 30 1 5.2373 2.2218 0.4075 31 1 3.8401 4.5863 -4.4918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307059352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = -37.626694 kcal Electronic energy + Delta-G solvation = -12938.261036 eV Core-core repulsion = 10798.872841 eV Total energy + Delta-G solvation = -2139.388195 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.55843 -35.90010 -32.34565 -30.84731 -29.21846 -26.55625 -25.18213 -23.29856 -20.92373 -19.98937 -18.01614 -16.45340 -15.23410 -14.94129 -14.58729 -14.35942 -13.35135 -12.98041 -12.37006 -12.24345 -11.81131 -11.73733 -11.48859 -11.12323 -10.88670 -10.66227 -10.51466 -10.19820 -10.06101 -10.00707 -9.53710 -9.48375 -9.08583 -8.46591 -7.72838 -5.92715 -4.06060 3.33248 3.39964 3.43211 4.47229 4.91325 5.02587 5.18810 5.36180 5.45509 5.58160 5.64339 5.83351 5.89636 6.03058 6.13810 6.19925 6.25502 6.37947 6.41993 6.42965 6.55178 6.64509 6.75313 6.84329 7.00419 7.14661 7.71881 7.94353 8.35238 8.71625 9.13423 9.64974 11.14016 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.044168 B = 0.011261 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.795555 B = 2485.862646 C = 2730.896622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.086 3.914 5 C -0.127 4.127 6 C -0.133 4.133 7 C -0.144 4.144 8 C 0.205 3.795 9 H 0.036 0.964 10 C -0.542 4.542 11 H 0.058 0.942 12 C 0.078 3.922 13 N -0.864 5.864 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.342 6.342 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -7.074 6.440 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C -0.176 4.176 4 C 0.044 3.956 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.182 4.182 8 C 0.150 3.850 9 H 0.054 0.946 10 C -0.579 4.579 11 H 0.076 0.924 12 C -0.127 4.127 13 N -0.501 5.501 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 O -0.261 6.261 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.510 -6.972 6.069 9.887 hybrid contribution 0.089 1.024 0.261 1.060 sum -3.421 -5.948 6.330 9.336 Atomic orbital electron populations 1.21676 0.95258 1.00846 1.01635 1.22385 0.95037 0.98438 0.97784 1.23328 0.98911 0.95827 0.99574 1.22662 0.92251 0.90661 0.89995 1.23148 0.98418 0.98254 0.96646 1.22871 0.96013 0.98315 0.99830 1.23217 0.98074 0.95565 1.01297 1.20330 0.81033 0.93080 0.90539 0.94615 1.21372 1.46575 0.90825 0.99148 0.92392 1.25053 0.94100 0.98447 0.95123 1.70044 1.42103 1.34891 1.03018 0.86691 0.77669 0.85950 0.78179 1.20606 1.21148 1.19854 1.88647 1.34085 1.60063 1.43288 0.92538 0.93275 0.92988 0.90021 0.92268 0.89719 0.89787 0.92115 0.91812 0.91517 0.92425 0.91676 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.71 37.16 0.36 -1.45 16 2 C -0.12 -1.81 4.18 -89.64 -0.37 -2.19 16 3 C -0.14 -2.61 7.14 -26.30 -0.19 -2.80 16 4 C 0.09 1.78 1.44 -90.19 -0.13 1.65 16 5 C -0.13 -2.24 7.19 -26.31 -0.19 -2.43 16 6 C -0.13 -2.47 6.21 -24.86 -0.15 -2.62 16 7 C -0.14 -3.06 6.54 -24.66 -0.16 -3.22 16 8 C 0.21 5.47 3.37 -27.12 -0.09 5.37 16 9 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 10 C -0.54 -15.56 8.75 -34.44 -0.30 -15.86 16 11 H 0.06 1.62 7.52 -52.49 -0.39 1.23 16 12 C 0.08 2.27 5.41 -17.82 -0.10 2.17 16 13 N -0.86 -26.33 12.91 55.43 0.72 -25.62 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 O -0.34 -9.18 10.31 -35.23 -0.36 -9.55 16 19 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 24 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 25 H 0.08 1.55 7.97 -51.92 -0.41 1.14 16 26 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.06 1.39 7.65 -51.93 -0.40 0.99 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 254.63 15.07 3.84 3.84 Total: -1.00 -30.84 254.63 -7.13 -37.96 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.97 Total: -2.08 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.33 Total: -21.38 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.72 Total: -25.62 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.36 Total: -9.55 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.84 -7.13 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307059352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.338 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds