Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53952 * 113.58821 * 2 1 4 4 C 1.52878 * 86.81037 * 220.65558 * 3 2 1 5 5 C 1.52864 * 88.01329 * 24.92634 * 4 3 2 6 6 C 1.54091 * 115.02442 * 268.10927 * 4 3 2 7 7 C 1.55459 * 100.80277 * 265.34531 * 6 4 3 8 8 C 1.54457 * 102.35907 * 326.80200 * 7 6 4 9 9 H 1.08999 * 109.83240 * 261.85410 * 8 7 6 10 10 C 1.50707 * 109.82798 * 140.87514 * 8 7 6 11 11 H 1.07994 * 120.00508 * 0.42540 * 10 8 7 12 12 C 1.37879 * 119.99771 * 180.42013 * 10 8 7 13 13 N 1.31516 * 119.99987 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 120.00024 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47175 * 90.00722 * 14 12 10 16 16 H 1.48507 * 109.47065 * 210.00273 * 14 12 10 17 17 H 1.48498 * 109.47261 * 330.00237 * 14 12 10 18 18 O 1.42645 * 116.02260 * 143.08937 * 4 3 2 19 19 H 1.08993 * 109.47303 * 60.00003 * 1 2 3 20 20 H 1.09001 * 109.46553 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46684 * 299.99324 * 1 2 3 22 22 H 1.08999 * 112.89173 * 131.16943 * 2 1 3 23 23 H 1.09003 * 113.65229 * 106.17683 * 3 2 1 24 24 H 1.08995 * 113.74189 * 335.14460 * 3 2 1 25 25 H 1.09010 * 113.65432 * 89.55119 * 5 4 3 26 26 H 1.08994 * 113.66242 * 220.59134 * 5 4 3 27 27 H 1.09001 * 111.15577 * 23.23615 * 6 4 3 28 28 H 1.09001 * 111.14598 * 147.46254 * 6 4 3 29 29 H 1.09010 * 110.82773 * 208.58707 * 7 6 4 30 30 H 1.08993 * 111.00305 * 85.10096 * 7 6 4 31 31 H 0.97001 * 120.00001 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4109 0.0000 4 6 3.1732 0.8695 -0.9945 5 6 2.1461 -0.1881 -1.3982 6 6 4.4646 0.3163 -0.3615 7 6 5.3888 1.5633 -0.4477 8 6 4.9118 2.2387 -1.7523 9 1 5.5747 1.9662 -2.5736 10 6 4.8995 3.7356 -1.5781 11 1 5.2059 4.1726 -0.6392 12 6 4.4971 4.5473 -2.6175 13 7 4.1236 4.0152 -3.7607 14 14 4.4824 6.4027 -2.4018 15 1 5.7989 6.9585 -2.8060 16 1 3.4151 6.9913 -3.2503 17 1 4.2215 6.7335 -0.9778 18 8 3.5832 1.7692 -2.0228 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.9540 -0.6610 0.7559 23 1 2.5760 1.7003 0.9589 24 1 1.4920 2.1753 -0.4194 25 1 1.4909 0.1262 -2.2108 26 1 2.5759 -1.1770 -1.5574 27 1 4.2993 0.0201 0.6744 28 1 4.8656 -0.5117 -0.9461 29 1 6.4347 1.2660 -0.5252 30 1 5.2373 2.2218 0.4075 31 1 3.8401 4.5863 -4.4918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307059352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = -56.698559 kcal Electronic energy + Delta-G solvation = -12939.088054 eV Core-core repulsion = 10798.872841 eV Total energy + Delta-G solvation = -2140.215213 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13776 -37.58380 -34.49600 -32.60964 -30.67642 -28.36472 -26.64118 -25.16150 -22.42711 -21.74991 -19.53275 -18.59740 -16.90238 -16.72524 -16.23785 -16.00920 -15.12454 -14.38709 -14.03883 -13.70893 -13.62870 -13.26397 -12.97747 -12.81275 -12.64569 -12.40091 -12.22027 -12.06445 -11.61306 -11.44613 -11.15518 -11.01791 -10.93688 -10.63559 -9.67793 -8.12642 -6.34063 1.37291 1.39084 1.49599 2.39761 3.07005 3.49659 3.69644 3.78445 3.97446 4.01463 4.30799 4.42167 4.52324 4.62119 4.73013 4.89763 4.91027 4.94244 4.97744 5.06003 5.09954 5.12361 5.22765 5.32603 5.49825 5.65428 5.72347 5.78523 6.20098 6.64017 7.13894 7.43357 8.94536 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.044168 B = 0.011261 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.795555 B = 2485.862646 C = 2730.896622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.055 3.945 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.137 4.137 8 C 0.197 3.803 9 H -0.003 1.003 10 C -0.561 4.561 11 H 0.060 0.940 12 C 0.020 3.980 13 N -0.905 5.905 14 Si 0.959 3.041 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.265 1.265 18 O -0.383 6.383 19 H 0.040 0.960 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.111 0.889 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -7.939 8.419 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.182 4.182 4 C 0.015 3.985 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.175 4.175 8 C 0.141 3.859 9 H 0.015 0.985 10 C -0.598 4.598 11 H 0.078 0.922 12 C -0.181 4.181 13 N -0.543 5.543 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.190 1.190 18 O -0.303 6.303 19 H 0.060 0.940 20 H 0.092 0.908 21 H 0.082 0.918 22 H 0.129 0.871 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.876 -7.846 8.066 11.901 hybrid contribution 0.202 1.253 -0.367 1.321 sum -3.674 -6.593 7.699 10.781 Atomic orbital electron populations 1.21675 0.93635 1.02451 1.01557 1.22340 0.96352 0.95809 0.96583 1.23305 0.98415 0.97498 0.99028 1.23303 0.94124 0.91197 0.89909 1.23137 0.97340 0.98109 0.97750 1.22844 0.93608 0.97112 1.01940 1.23090 0.99662 0.96513 0.98202 1.20224 0.81037 0.92816 0.91825 0.98487 1.21801 1.46252 0.92544 0.99215 0.92201 1.25963 0.93711 1.03675 0.94754 1.70196 1.43449 1.36704 1.03937 0.85574 0.78059 0.79666 0.78398 1.19364 1.20935 1.18956 1.88552 1.33926 1.61782 1.46063 0.94036 0.90783 0.91765 0.87053 0.91526 0.92537 0.91706 0.89966 0.88208 0.90302 0.90664 0.91763 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.71 71.98 0.70 -2.51 16 2 C -0.09 -2.56 4.18 -10.16 -0.04 -2.60 16 3 C -0.14 -5.29 7.14 30.88 0.22 -5.07 16 4 C 0.05 2.24 1.44 -10.52 -0.02 2.23 16 5 C -0.13 -4.24 7.19 30.87 0.22 -4.01 16 6 C -0.12 -4.08 6.21 31.81 0.20 -3.88 16 7 C -0.14 -5.72 6.54 31.94 0.21 -5.51 16 8 C 0.20 10.76 3.37 30.35 0.10 10.87 16 9 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 10 C -0.56 -32.95 8.75 25.60 0.22 -32.72 16 11 H 0.06 3.38 7.52 -2.91 -0.02 3.36 16 12 C 0.02 1.21 5.41 84.65 0.46 1.66 16 13 N -0.91 -57.12 12.91 21.45 0.28 -56.84 16 14 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 O -0.38 -21.23 10.31 -148.98 -1.54 -22.76 16 19 H 0.04 1.09 7.95 -2.39 -0.02 1.07 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 23 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 24 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 25 H 0.06 2.41 7.97 -2.38 -0.02 2.39 16 26 H 0.08 2.38 8.11 -2.39 -0.02 2.36 16 27 H 0.10 2.76 8.04 -2.39 -0.02 2.74 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.06 2.66 7.65 -2.39 -0.02 2.64 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -68.94 254.63 4.12 -64.82 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.08 Total: 8.74 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 2.27 Total: -41.55 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.28 Total: -56.84 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.54 Total: -22.76 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.94 4.12 -64.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307059352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.122 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds