Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53955 * 113.58885 * 2 1 4 4 C 1.52798 * 86.79471 * 220.69146 * 3 2 1 5 5 C 1.52812 * 88.07632 * 24.89682 * 4 3 2 6 6 C 1.53556 * 115.48769 * 142.31904 * 4 3 2 7 7 C 1.54721 * 103.75179 * 152.49619 * 6 4 3 8 8 C 1.54544 * 104.07160 * 0.69570 * 7 6 4 9 9 H 1.09010 * 110.33321 * 95.32009 * 8 7 6 10 10 C 1.50702 * 110.33715 * 217.44655 * 8 7 6 11 11 H 1.08002 * 119.99441 * 358.55724 * 10 8 7 12 12 C 1.37871 * 120.00075 * 178.55299 * 10 8 7 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 8 15 15 H 1.48494 * 109.47225 * 180.27306 * 14 12 10 16 16 H 1.48506 * 109.46866 * 300.27330 * 14 12 10 17 17 H 1.48498 * 109.47306 * 60.26614 * 14 12 10 18 18 O 1.43444 * 115.73096 * 267.26628 * 4 3 2 19 19 H 1.08996 * 109.46871 * 59.99929 * 1 2 3 20 20 H 1.09003 * 109.47070 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47235 * 300.00146 * 1 2 3 22 22 H 1.09004 * 112.82326 * 131.11017 * 2 1 3 23 23 H 1.09000 * 113.65946 * 106.20816 * 3 2 1 24 24 H 1.09003 * 113.65516 * 335.16684 * 3 2 1 25 25 H 1.08996 * 113.66232 * 89.57697 * 5 4 3 26 26 H 1.09002 * 113.66318 * 220.63298 * 5 4 3 27 27 H 1.09001 * 110.56790 * 33.93359 * 6 4 3 28 28 H 1.09001 * 110.69728 * 271.12224 * 6 4 3 29 29 H 1.08998 * 110.50924 * 242.04919 * 7 6 4 30 30 H 1.08995 * 110.50673 * 119.34337 * 7 6 4 31 31 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4109 0.0000 4 6 3.1720 0.8697 -0.9947 5 6 2.1461 -0.1885 -1.3983 6 6 3.5903 1.8419 -2.1072 7 6 5.0231 1.3871 -2.4736 8 6 5.2835 0.1804 -1.5438 9 1 5.0543 -0.7520 -2.0600 10 6 6.7159 0.1798 -1.0752 11 1 7.3964 0.9451 -1.4181 12 6 7.1573 -0.7975 -0.2087 13 7 6.3284 -1.7290 0.2094 14 14 8.9347 -0.8025 0.3662 15 1 9.1559 -1.9514 1.2806 16 1 9.8346 -0.9245 -0.8088 17 1 9.2265 0.4645 1.0836 18 8 4.3884 0.3677 -0.4236 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.9528 -0.6606 0.7570 23 1 2.5765 1.7003 0.9587 24 1 1.4907 2.1743 -0.4193 25 1 1.4908 0.1251 -2.2109 26 1 2.5766 -1.1772 -1.5569 27 1 3.5969 2.8672 -1.7374 28 1 2.9278 1.7505 -2.9679 29 1 5.7394 2.1841 -2.2745 30 1 5.0711 1.0813 -3.5187 31 1 5.4053 -1.7262 -0.0888 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307059354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = -43.688656 kcal Electronic energy + Delta-G solvation = -12949.303040 eV Core-core repulsion = 10809.651979 eV Total energy + Delta-G solvation = -2139.651061 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72127 -35.98956 -32.52079 -31.07174 -29.20651 -26.36389 -25.36822 -23.30725 -20.90224 -19.83063 -18.52351 -17.02012 -15.28447 -15.09934 -14.15809 -13.74815 -13.69467 -13.27772 -13.07248 -12.51774 -12.14261 -11.61601 -11.47850 -11.25979 -10.79825 -10.62351 -10.48376 -10.27985 -10.04960 -10.01320 -9.60045 -9.42453 -8.75384 -8.49113 -8.11596 -6.34793 -4.12675 3.45009 3.47980 3.66312 4.54031 4.71886 4.95688 5.11994 5.22004 5.40040 5.60175 5.63369 5.76860 5.83341 5.94076 5.99541 6.03785 6.13964 6.23069 6.29119 6.32395 6.48700 6.59617 6.69237 6.71885 6.91911 6.97046 7.32488 8.06631 8.33996 8.51060 8.89295 9.69416 11.06371 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051866 B = 0.010719 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.719725 B = 2611.578981 C = 2930.472149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.126 4.126 4 C 0.078 3.922 5 C -0.153 4.153 6 C -0.138 4.138 7 C -0.139 4.139 8 C 0.189 3.811 9 H 0.018 0.982 10 C -0.606 4.606 11 H 0.056 0.944 12 C 0.030 3.970 13 N -0.891 5.891 14 Si 1.070 2.930 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.287 1.287 18 O -0.345 6.345 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 4.506 -2.607 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.164 4.164 4 C 0.037 3.963 5 C -0.191 4.191 6 C -0.176 4.176 7 C -0.177 4.177 8 C 0.135 3.865 9 H 0.035 0.965 10 C -0.643 4.643 11 H 0.074 0.926 12 C -0.178 4.178 13 N -0.526 5.526 14 Si 0.897 3.103 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.213 1.213 18 O -0.264 6.264 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.215 3.639 -1.443 8.209 hybrid contribution -1.182 0.938 -1.237 1.951 sum -8.398 4.576 -2.680 9.932 Atomic orbital electron populations 1.21721 0.95542 1.01176 1.01115 1.22427 0.94339 0.97755 0.98216 1.22967 0.96921 0.96385 1.00111 1.22418 0.88045 0.92947 0.92932 1.23426 0.98506 1.00719 0.96406 1.22702 0.97624 0.99261 0.97980 1.22930 0.94944 1.00391 0.99417 1.20733 0.90145 0.91698 0.83973 0.96471 1.21948 0.92816 1.15728 1.33846 0.92566 1.25896 1.05948 0.92374 0.93571 1.70672 1.07413 1.33021 1.41447 0.83557 0.74039 0.76246 0.76425 1.20674 1.21346 1.21336 1.89317 1.20540 1.84413 1.32159 0.93041 0.92999 0.92919 0.89070 0.91069 0.90057 0.90461 0.91274 0.91838 0.92130 0.91710 0.92796 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.71 37.16 0.36 -1.43 16 2 C -0.11 -1.81 4.36 -89.63 -0.39 -2.20 16 3 C -0.13 -2.18 7.17 -26.34 -0.19 -2.37 16 4 C 0.08 1.59 1.13 -90.54 -0.10 1.49 16 5 C -0.15 -2.74 7.12 -26.33 -0.19 -2.93 16 6 C -0.14 -2.60 6.48 -25.54 -0.17 -2.77 16 7 C -0.14 -3.05 6.63 -25.01 -0.17 -3.21 16 8 C 0.19 5.05 2.65 -27.07 -0.07 4.98 16 9 H 0.02 0.49 8.00 -51.92 -0.42 0.08 16 10 C -0.61 -17.79 8.78 -34.44 -0.30 -18.09 16 11 H 0.06 1.61 7.57 -52.49 -0.40 1.21 16 12 C 0.03 0.89 5.42 -17.82 -0.10 0.80 16 13 N -0.89 -27.88 13.57 55.43 0.75 -27.13 16 14 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 O -0.34 -9.12 10.09 -35.23 -0.36 -9.47 16 19 H 0.05 0.61 7.95 -51.93 -0.41 0.20 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 25 H 0.08 1.19 7.80 -51.93 -0.40 0.79 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 28 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 29 H 0.06 1.44 7.71 -51.93 -0.40 1.04 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.28 8.82 6.61 -40.82 -0.27 8.55 16 LS Contribution 252.87 15.07 3.81 3.81 Total: -1.00 -31.48 252.87 -7.07 -38.55 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.88 Total: -0.62 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -1.31 Total: -25.73 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.75 Total: -27.13 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.36 Total: -9.47 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.48 -7.07 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307059354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.137 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds