Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53955 * 113.58885 * 2 1 4 4 C 1.52798 * 86.79471 * 220.69146 * 3 2 1 5 5 C 1.52812 * 88.07632 * 24.89682 * 4 3 2 6 6 C 1.53556 * 115.48769 * 142.31904 * 4 3 2 7 7 C 1.54721 * 103.75179 * 152.49619 * 6 4 3 8 8 C 1.54544 * 104.07160 * 0.69570 * 7 6 4 9 9 H 1.09010 * 110.33321 * 95.32009 * 8 7 6 10 10 C 1.50702 * 110.33715 * 217.44655 * 8 7 6 11 11 H 1.08002 * 119.99441 * 358.55724 * 10 8 7 12 12 C 1.37871 * 120.00075 * 178.55299 * 10 8 7 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 8 15 15 H 1.48494 * 109.47225 * 180.27306 * 14 12 10 16 16 H 1.48506 * 109.46866 * 300.27330 * 14 12 10 17 17 H 1.48498 * 109.47306 * 60.26614 * 14 12 10 18 18 O 1.43444 * 115.73096 * 267.26628 * 4 3 2 19 19 H 1.08996 * 109.46871 * 59.99929 * 1 2 3 20 20 H 1.09003 * 109.47070 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47235 * 300.00146 * 1 2 3 22 22 H 1.09004 * 112.82326 * 131.11017 * 2 1 3 23 23 H 1.09000 * 113.65946 * 106.20816 * 3 2 1 24 24 H 1.09003 * 113.65516 * 335.16684 * 3 2 1 25 25 H 1.08996 * 113.66232 * 89.57697 * 5 4 3 26 26 H 1.09002 * 113.66318 * 220.63298 * 5 4 3 27 27 H 1.09001 * 110.56790 * 33.93359 * 6 4 3 28 28 H 1.09001 * 110.69728 * 271.12224 * 6 4 3 29 29 H 1.08998 * 110.50924 * 242.04919 * 7 6 4 30 30 H 1.08995 * 110.50673 * 119.34337 * 7 6 4 31 31 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4109 0.0000 4 6 3.1720 0.8697 -0.9947 5 6 2.1461 -0.1885 -1.3983 6 6 3.5903 1.8419 -2.1072 7 6 5.0231 1.3871 -2.4736 8 6 5.2835 0.1804 -1.5438 9 1 5.0543 -0.7520 -2.0600 10 6 6.7159 0.1798 -1.0752 11 1 7.3964 0.9451 -1.4181 12 6 7.1573 -0.7975 -0.2087 13 7 6.3284 -1.7290 0.2094 14 14 8.9347 -0.8025 0.3662 15 1 9.1559 -1.9514 1.2806 16 1 9.8346 -0.9245 -0.8088 17 1 9.2265 0.4645 1.0836 18 8 4.3884 0.3677 -0.4236 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.9528 -0.6606 0.7570 23 1 2.5765 1.7003 0.9587 24 1 1.4907 2.1743 -0.4193 25 1 1.4908 0.1251 -2.2109 26 1 2.5766 -1.1772 -1.5569 27 1 3.5969 2.8672 -1.7374 28 1 2.9278 1.7505 -2.9679 29 1 5.7394 2.1841 -2.2745 30 1 5.0711 1.0813 -3.5187 31 1 5.4053 -1.7262 -0.0888 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307059354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = -63.410621 kcal Electronic energy + Delta-G solvation = -12950.158249 eV Core-core repulsion = 10809.651979 eV Total energy + Delta-G solvation = -2140.506270 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32644 -37.68869 -34.67907 -32.84858 -30.64708 -28.14964 -26.81016 -25.23803 -22.71037 -21.38063 -20.03233 -19.18481 -16.99344 -16.70533 -15.93112 -15.61728 -15.35109 -14.87234 -14.54333 -13.95203 -13.78126 -13.26559 -13.08197 -12.70865 -12.63353 -12.31021 -12.14989 -11.91766 -11.81859 -11.42727 -11.23882 -10.96618 -10.74594 -10.63226 -10.09615 -8.69972 -6.48825 1.49909 1.59370 1.78727 2.54128 2.97068 3.37216 3.61591 3.67937 3.80274 4.02273 4.18088 4.22875 4.34536 4.53304 4.63719 4.73012 4.80568 4.83140 4.89510 4.92036 4.99048 5.05047 5.18966 5.24933 5.33526 5.51607 5.57303 5.90917 6.06448 6.44816 6.64457 7.44148 8.70118 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.051866 B = 0.010719 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.719725 B = 2611.578981 C = 2930.472149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.115 4.115 4 C 0.048 3.952 5 C -0.147 4.147 6 C -0.127 4.127 7 C -0.136 4.136 8 C 0.183 3.817 9 H -0.014 1.014 10 C -0.628 4.628 11 H 0.057 0.943 12 C -0.024 4.024 13 N -0.919 5.919 14 Si 1.119 2.881 15 H -0.282 1.282 16 H -0.263 1.263 17 H -0.271 1.271 18 O -0.384 6.384 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 6.113 -3.312 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 C -0.152 4.152 4 C 0.008 3.992 5 C -0.185 4.185 6 C -0.164 4.164 7 C -0.174 4.174 8 C 0.127 3.873 9 H 0.003 0.997 10 C -0.665 4.665 11 H 0.075 0.925 12 C -0.225 4.225 13 N -0.554 5.554 14 Si 0.939 3.061 15 H -0.207 1.207 16 H -0.188 1.188 17 H -0.197 1.197 18 O -0.304 6.304 19 H 0.091 0.909 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.139 0.861 25 H 0.132 0.868 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.321 5.263 -2.167 10.082 hybrid contribution -0.898 0.446 -1.046 1.449 sum -9.219 5.709 -3.213 11.310 Atomic orbital electron populations 1.21662 0.91984 1.02171 1.02818 1.22345 0.97150 0.96734 0.96362 1.23016 0.96066 0.97490 0.98602 1.22960 0.86975 0.94536 0.94777 1.23458 0.98211 0.98385 0.98404 1.22701 0.95758 0.99387 0.98557 1.22848 0.97199 0.98101 0.99203 1.20600 0.89371 0.92471 0.84837 0.99655 1.22415 0.94753 1.15665 1.33648 0.92488 1.27527 1.09755 0.91743 0.93486 1.70809 1.06910 1.34570 1.43160 0.82946 0.69366 0.76796 0.76948 1.20723 1.18779 1.19660 1.89205 1.23170 1.85198 1.32799 0.90931 0.92469 0.91553 0.92453 0.92755 0.86065 0.86800 0.94430 0.90240 0.88670 0.92333 0.91137 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.71 71.98 0.70 -2.22 16 2 C -0.11 -3.45 4.36 -10.15 -0.04 -3.49 16 3 C -0.11 -3.72 7.17 30.85 0.22 -3.50 16 4 C 0.05 1.91 1.13 -10.74 -0.01 1.90 16 5 C -0.15 -5.11 7.12 30.85 0.22 -4.89 16 6 C -0.13 -4.43 6.48 31.37 0.20 -4.23 16 7 C -0.14 -5.85 6.63 31.71 0.21 -5.64 16 8 C 0.18 10.03 2.65 30.37 0.08 10.11 16 9 H -0.01 -0.84 8.00 -2.38 -0.02 -0.86 16 10 C -0.63 -37.76 8.78 25.60 0.22 -37.54 16 11 H 0.06 3.31 7.57 -2.91 -0.02 3.29 16 12 C -0.02 -1.47 5.42 84.65 0.46 -1.01 16 13 N -0.92 -59.80 13.57 21.45 0.29 -59.50 16 14 Si 1.12 52.02 29.90 68.60 2.05 54.07 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 O -0.38 -20.94 10.09 -148.98 -1.50 -22.44 16 19 H 0.07 1.36 7.95 -2.39 -0.02 1.35 16 20 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 24 H 0.12 2.98 8.10 -2.39 -0.02 2.96 16 25 H 0.11 3.09 7.80 -2.39 -0.02 3.07 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 28 H 0.09 2.68 7.85 -2.39 -0.02 2.66 16 29 H 0.06 2.55 7.71 -2.39 -0.02 2.54 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.26 17.53 6.61 -92.70 -0.61 16.92 16 Total: -1.00 -71.29 252.87 4.34 -66.95 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.24 Total: 11.42 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 2.26 Total: -50.50 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.29 Total: -59.50 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.50 Total: -22.44 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -71.29 4.34 -66.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307059354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.542 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds