Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 112.88389 * 2 1 4 4 C 1.53963 * 113.74333 * 228.58850 * 2 1 3 5 5 C 1.53964 * 87.24969 * 220.79200 * 4 2 1 6 6 C 1.52801 * 113.66651 * 131.34570 * 2 1 3 7 7 C 1.53561 * 115.48264 * 256.88826 * 6 2 1 8 8 C 1.54717 * 103.75099 * 152.48966 * 7 6 2 9 9 C 1.54547 * 104.07398 * 0.69465 * 8 7 6 10 10 H 1.09004 * 110.33003 * 95.31847 * 9 8 7 11 11 C 1.50694 * 110.33364 * 217.44947 * 9 8 7 12 12 H 1.08000 * 120.00563 * 358.54880 * 11 9 8 13 13 C 1.37885 * 119.99902 * 178.55043 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.43446 * 115.72823 * 21.82675 * 6 2 1 20 20 H 1.09006 * 109.46635 * 288.65397 * 1 2 3 21 21 H 1.08999 * 109.47740 * 48.65271 * 1 2 3 22 22 H 1.09003 * 109.46817 * 168.65904 * 1 2 3 23 23 H 1.08991 * 113.58433 * 335.38310 * 4 2 1 24 24 H 1.09000 * 113.58939 * 106.12481 * 4 2 1 25 25 H 1.08994 * 113.66214 * 270.23806 * 5 4 2 26 26 H 1.09004 * 113.65742 * 139.18282 * 5 4 2 27 27 H 1.08987 * 110.56904 * 33.92058 * 7 6 2 28 28 H 1.09000 * 110.69243 * 271.11190 * 7 6 2 29 29 H 1.09002 * 110.50776 * 242.04786 * 8 7 6 30 30 H 1.09005 * 110.62723 * 119.39579 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9538 1.0043 0.0000 4 6 2.1499 -0.9322 -1.0570 5 6 3.1859 -1.3309 0.0099 6 6 2.1433 -0.9245 1.0507 7 6 2.6965 -0.2273 2.3020 8 6 2.5737 -1.3032 3.4071 9 6 1.9754 -2.5263 2.6759 10 1 2.7685 -3.2046 2.3613 11 6 0.9976 -3.2441 3.5700 12 1 0.8259 -2.8909 4.5761 13 6 0.3221 -4.3521 3.1037 14 7 0.5308 -4.7820 1.8785 15 14 -0.8894 -5.2423 4.2123 16 1 -0.1791 -6.3029 4.9711 17 1 -1.4944 -4.2746 5.1625 18 1 -1.9581 -5.8572 3.3846 19 8 1.2946 -1.9801 1.5229 20 1 -0.3633 0.3287 0.9738 21 1 -0.3634 0.6789 -0.7715 22 1 -0.3633 -1.0076 -0.2021 23 1 1.4942 -1.7501 -1.3553 24 1 2.5795 -0.4027 -1.9074 25 1 4.0754 -0.7011 0.0128 26 1 3.4189 -2.3957 0.0169 27 1 2.0954 0.6472 2.5504 28 1 3.7393 0.0548 2.1565 29 1 1.9029 -0.9646 4.1968 30 1 3.5539 -1.5456 3.8177 31 1 0.0559 -5.5616 1.5506 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307184662.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = -35.991619 kcal Electronic energy + Delta-G solvation = -13098.614765 eV Core-core repulsion = 10959.297472 eV Total energy + Delta-G solvation = -2139.317293 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57605 -35.52063 -32.31768 -30.86197 -29.18926 -27.56184 -24.20160 -22.61614 -21.39969 -19.97123 -18.20090 -16.61396 -15.21363 -14.44997 -14.30746 -14.14842 -13.62126 -12.81872 -12.59217 -12.38186 -11.77074 -11.72914 -11.25178 -11.00317 -10.90918 -10.57020 -10.48542 -10.17698 -9.98541 -9.97788 -9.31171 -9.25145 -9.03680 -8.54902 -7.95474 -5.99415 -4.11524 3.31702 3.38413 3.42000 4.43759 4.85323 5.18645 5.23561 5.38772 5.43200 5.78311 5.91178 5.94117 6.02061 6.06760 6.19439 6.27496 6.33767 6.41652 6.55780 6.59339 6.73001 6.77204 6.85957 6.94170 7.12906 7.15743 7.58485 7.90942 8.27064 8.62190 9.01292 9.58625 11.08330 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045146 B = 0.012012 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.067545 B = 2330.458098 C = 2520.618118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.160 4.160 6 C 0.082 3.918 7 C -0.139 4.139 8 C -0.147 4.147 9 C 0.207 3.793 10 H 0.025 0.975 11 C -0.530 4.530 12 H 0.063 0.937 13 C 0.077 3.923 14 N -0.863 5.863 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.273 1.273 18 H -0.285 1.285 19 O -0.322 6.322 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 7.504 -2.865 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.198 4.198 6 C 0.040 3.960 7 C -0.177 4.177 8 C -0.185 4.185 9 C 0.151 3.849 10 H 0.042 0.958 11 C -0.567 4.567 12 H 0.081 0.919 13 C -0.129 4.129 14 N -0.500 5.500 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.198 1.198 18 H -0.211 1.211 19 O -0.240 6.240 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.809 7.288 -3.084 8.398 hybrid contribution -0.401 -0.444 0.622 0.863 sum 2.408 6.844 -2.462 7.662 Atomic orbital electron populations 1.21481 0.94526 1.02041 1.00545 1.22516 0.96382 0.97167 0.96244 0.89822 1.22885 0.98571 0.99326 0.95712 1.23289 0.96890 1.01909 0.97684 1.22482 0.91499 0.90337 0.91642 1.22711 0.99678 0.98710 0.96568 1.23057 1.00028 0.97242 0.98126 1.20544 0.92501 0.89154 0.82660 0.95759 1.21061 1.26362 1.11008 0.98277 0.91903 1.25083 0.96335 0.96650 0.94828 1.70040 1.40911 1.23677 1.15341 0.86621 0.81060 0.79829 0.80607 1.20560 1.19751 1.21099 1.89353 1.41791 1.46328 1.46562 0.92792 0.94198 0.91641 0.89838 0.92689 0.90904 0.90910 0.92072 0.92371 0.91965 0.92920 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.18 37.16 0.34 -1.95 16 2 C -0.10 -1.84 3.98 -90.22 -0.36 -2.19 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.13 -2.19 7.65 -25.74 -0.20 -2.39 16 5 C -0.16 -2.95 7.57 -26.32 -0.20 -3.15 16 6 C 0.08 1.69 0.99 -90.54 -0.09 1.60 16 7 C -0.14 -2.63 6.48 -25.54 -0.17 -2.80 16 8 C -0.15 -3.18 6.63 -25.02 -0.17 -3.35 16 9 C 0.21 5.46 3.10 -27.07 -0.08 5.38 16 10 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.53 -15.15 8.78 -34.44 -0.30 -15.45 16 12 H 0.06 1.75 7.57 -52.49 -0.40 1.35 16 13 C 0.08 2.20 5.42 -17.82 -0.10 2.11 16 14 N -0.86 -25.87 12.99 55.43 0.72 -25.15 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 O -0.32 -8.41 9.84 -35.23 -0.35 -8.76 16 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 23 H 0.08 1.58 7.96 -51.93 -0.41 1.16 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 26 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.06 1.09 8.11 -51.94 -0.42 0.66 16 28 H 0.06 0.96 7.85 -51.93 -0.41 0.56 16 29 H 0.06 1.35 7.71 -51.93 -0.40 0.95 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 253.69 15.07 3.82 3.82 Total: -1.00 -30.13 253.69 -7.09 -37.22 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.95 Total: -1.56 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.32 Total: -22.20 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.72 Total: -25.15 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.35 Total: -8.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.13 -7.09 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307184662.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds