Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 112.88389 * 2 1 4 4 C 1.53963 * 113.74333 * 228.58850 * 2 1 3 5 5 C 1.53964 * 87.24969 * 220.79200 * 4 2 1 6 6 C 1.52801 * 113.66651 * 131.34570 * 2 1 3 7 7 C 1.53561 * 115.48264 * 256.88826 * 6 2 1 8 8 C 1.54717 * 103.75099 * 152.48966 * 7 6 2 9 9 C 1.54547 * 104.07398 * 0.69465 * 8 7 6 10 10 H 1.09004 * 110.33003 * 95.31847 * 9 8 7 11 11 C 1.50694 * 110.33364 * 217.44947 * 9 8 7 12 12 H 1.08000 * 120.00563 * 358.54880 * 11 9 8 13 13 C 1.37885 * 119.99902 * 178.55043 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.43446 * 115.72823 * 21.82675 * 6 2 1 20 20 H 1.09006 * 109.46635 * 288.65397 * 1 2 3 21 21 H 1.08999 * 109.47740 * 48.65271 * 1 2 3 22 22 H 1.09003 * 109.46817 * 168.65904 * 1 2 3 23 23 H 1.08991 * 113.58433 * 335.38310 * 4 2 1 24 24 H 1.09000 * 113.58939 * 106.12481 * 4 2 1 25 25 H 1.08994 * 113.66214 * 270.23806 * 5 4 2 26 26 H 1.09004 * 113.65742 * 139.18282 * 5 4 2 27 27 H 1.08987 * 110.56904 * 33.92058 * 7 6 2 28 28 H 1.09000 * 110.69243 * 271.11190 * 7 6 2 29 29 H 1.09002 * 110.50776 * 242.04786 * 8 7 6 30 30 H 1.09005 * 110.62723 * 119.39579 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9538 1.0043 0.0000 4 6 2.1499 -0.9322 -1.0570 5 6 3.1859 -1.3309 0.0099 6 6 2.1433 -0.9245 1.0507 7 6 2.6965 -0.2273 2.3020 8 6 2.5737 -1.3032 3.4071 9 6 1.9754 -2.5263 2.6759 10 1 2.7685 -3.2046 2.3613 11 6 0.9976 -3.2441 3.5700 12 1 0.8259 -2.8909 4.5761 13 6 0.3221 -4.3521 3.1037 14 7 0.5308 -4.7820 1.8785 15 14 -0.8894 -5.2423 4.2123 16 1 -0.1791 -6.3029 4.9711 17 1 -1.4944 -4.2746 5.1625 18 1 -1.9581 -5.8572 3.3846 19 8 1.2946 -1.9801 1.5229 20 1 -0.3633 0.3287 0.9738 21 1 -0.3634 0.6789 -0.7715 22 1 -0.3633 -1.0076 -0.2021 23 1 1.4942 -1.7501 -1.3553 24 1 2.5795 -0.4027 -1.9074 25 1 4.0754 -0.7011 0.0128 26 1 3.4189 -2.3957 0.0169 27 1 2.0954 0.6472 2.5504 28 1 3.7393 0.0548 2.1565 29 1 1.9029 -0.9646 4.1968 30 1 3.5539 -1.5456 3.8177 31 1 0.0559 -5.5616 1.5506 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307184662.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = -54.396888 kcal Electronic energy + Delta-G solvation = -13099.412877 eV Core-core repulsion = 10959.297472 eV Total energy + Delta-G solvation = -2140.115405 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.17343 -37.24353 -34.45633 -32.61606 -30.63678 -29.47837 -26.09731 -24.08341 -23.07038 -21.72829 -19.74844 -18.74349 -16.95868 -16.38728 -16.00094 -15.72177 -15.31427 -14.35143 -14.24001 -14.10255 -13.60509 -13.38195 -12.88788 -12.81302 -12.47779 -12.43188 -12.15123 -11.95060 -11.69358 -11.45854 -11.02657 -10.99840 -10.78139 -10.58677 -9.84568 -8.17243 -6.37596 1.38120 1.40074 1.50858 2.38934 3.02386 3.48173 3.74257 3.78747 3.98772 4.18128 4.37714 4.41836 4.47516 4.61396 4.73547 4.82261 4.93151 4.95910 5.03650 5.07157 5.09018 5.16887 5.26288 5.39962 5.50588 5.67437 5.72076 5.73336 6.16934 6.59342 6.99075 7.37683 8.91054 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.045146 B = 0.012012 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.067545 B = 2330.458098 C = 2520.618118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 H 0.124 0.876 4 C -0.122 4.122 5 C -0.157 4.157 6 C 0.052 3.948 7 C -0.128 4.128 8 C -0.142 4.142 9 C 0.200 3.800 10 H -0.014 1.014 11 C -0.554 4.554 12 H 0.064 0.936 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.265 1.265 18 H -0.283 1.283 19 O -0.358 6.358 20 H 0.044 0.956 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 9.483 -2.809 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 H 0.141 0.859 4 C -0.159 4.159 5 C -0.195 4.195 6 C 0.011 3.989 7 C -0.166 4.166 8 C -0.180 4.180 9 C 0.144 3.856 10 H 0.004 0.996 11 C -0.591 4.591 12 H 0.082 0.918 13 C -0.181 4.181 14 N -0.540 5.540 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.189 1.189 18 H -0.208 1.208 19 O -0.277 6.277 20 H 0.063 0.937 21 H 0.093 0.907 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.169 9.279 -3.021 10.260 hybrid contribution -0.467 -1.041 0.566 1.274 sum 2.701 8.237 -2.455 9.010 Atomic orbital electron populations 1.21436 0.95155 1.00564 1.01178 1.22609 0.95937 0.98344 0.94322 0.85860 1.22808 0.97631 0.98692 0.96817 1.23334 0.98120 1.00533 0.97479 1.22998 0.92368 0.90102 0.93382 1.22701 1.01858 0.97866 0.94157 1.22950 1.00238 0.96205 0.98582 1.20388 0.91266 0.90609 0.83298 0.99590 1.21499 1.26860 1.11859 0.98911 0.91783 1.25985 0.98256 0.97537 0.96281 1.70188 1.42201 1.24292 1.17291 0.85509 0.78490 0.78690 0.78640 1.19338 1.18900 1.20833 1.89256 1.43379 1.48322 1.46729 0.93686 0.90747 0.95384 0.92887 0.88869 0.87203 0.94351 0.90494 0.89189 0.92366 0.91417 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.18 71.98 0.66 -3.65 16 2 C -0.09 -3.04 3.98 -10.54 -0.04 -3.08 16 3 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 4 C -0.12 -3.97 7.65 31.24 0.24 -3.73 16 5 C -0.16 -5.59 7.57 30.86 0.23 -5.35 16 6 C 0.05 2.09 0.99 -10.74 -0.01 2.08 16 7 C -0.13 -4.52 6.48 31.37 0.20 -4.31 16 8 C -0.14 -6.06 6.63 31.71 0.21 -5.85 16 9 C 0.20 10.91 3.10 30.37 0.09 11.01 16 10 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 11 C -0.55 -32.56 8.78 25.60 0.22 -32.34 16 12 H 0.06 3.62 7.57 -2.91 -0.02 3.60 16 13 C 0.02 1.25 5.42 84.66 0.46 1.71 16 14 N -0.90 -56.19 12.99 21.45 0.28 -55.91 16 15 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 O -0.36 -19.24 9.84 -148.98 -1.47 -20.71 16 20 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.03 1.13 7.75 -2.39 -0.02 1.12 16 23 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.11 3.06 7.97 -2.39 -0.02 3.04 16 26 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.08 2.46 8.11 -2.39 -0.02 2.44 16 28 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 29 H 0.06 2.49 7.71 -2.39 -0.02 2.47 16 30 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.94 253.69 4.19 -63.75 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.08 Total: 9.12 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 2.27 Total: -43.52 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.47 Total: -20.71 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.94 4.19 -63.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307184662.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.357 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds