Wall clock time and date at job start Mon Mar 30 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 112.93131 * 2 1 4 4 C 1.53901 * 113.64105 * 228.65919 * 2 1 3 5 5 C 1.53896 * 87.18544 * 270.46382 * 4 2 1 6 6 C 1.53141 * 86.90265 * 335.03304 * 5 4 2 7 7 C 1.53515 * 114.91099 * 141.56531 * 6 5 4 8 8 C 1.54976 * 103.89376 * 131.93509 * 7 6 5 9 9 C 1.55048 * 102.11653 * 20.86410 * 8 7 6 10 10 H 1.08999 * 110.59700 * 81.89060 * 9 8 7 11 11 C 1.50702 * 110.58940 * 204.81665 * 9 8 7 12 12 H 1.08003 * 120.00306 * 355.65925 * 11 9 8 13 13 C 1.37878 * 119.99646 * 175.65266 * 11 9 8 14 14 N 1.31511 * 120.00358 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 119.99720 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47236 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47148 * 120.00228 * 15 13 11 18 18 H 1.48503 * 109.46841 * 240.00279 * 15 13 11 19 19 O 1.43065 * 115.22697 * 268.19296 * 6 5 4 20 20 H 1.08999 * 109.46963 * 288.64841 * 1 2 3 21 21 H 1.08997 * 109.47604 * 48.64868 * 1 2 3 22 22 H 1.09003 * 109.47294 * 168.65011 * 1 2 3 23 23 H 1.08994 * 113.59735 * 155.88753 * 4 2 1 24 24 H 1.09000 * 113.67012 * 25.04517 * 4 2 1 25 25 H 1.09011 * 113.63895 * 220.52967 * 5 4 2 26 26 H 1.08992 * 113.72565 * 89.55337 * 5 4 2 27 27 H 1.09002 * 110.54257 * 250.54002 * 7 6 5 28 28 H 1.08999 * 110.54339 * 13.33220 * 7 6 5 29 29 H 1.09005 * 110.87168 * 139.01470 * 8 7 6 30 30 H 1.08994 * 110.87246 * 262.49566 * 8 7 6 31 31 H 0.96994 * 119.99930 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9547 1.0039 0.0000 4 6 2.1471 -0.9313 -1.0585 5 6 2.1054 -2.0428 0.0050 6 6 2.1442 -0.9270 1.0531 7 6 1.2676 -1.1704 2.2896 8 6 2.2079 -0.8551 3.4804 9 6 3.2924 0.0297 2.8133 10 1 2.9494 1.0612 2.7326 11 6 4.5840 -0.0418 3.5864 12 1 4.6298 -0.5976 4.5113 13 6 5.7074 0.6022 3.1128 14 7 5.6516 1.2793 1.9867 15 14 7.3087 0.5129 4.0707 16 1 7.1088 -0.3049 5.2939 17 1 8.3575 -0.1109 3.2246 18 1 7.7327 1.8833 4.4547 19 8 3.4513 -0.5573 1.5021 20 1 -0.3633 0.3286 0.9737 21 1 -0.3634 0.6789 -0.7714 22 1 -0.3634 -1.0076 -0.2022 23 1 3.1572 -0.6474 -1.3536 24 1 1.4941 -1.1183 -1.9109 25 1 2.9918 -2.6774 0.0090 26 1 1.1764 -2.6128 0.0074 27 1 0.4109 -0.4965 2.2898 28 1 0.9385 -2.2089 2.3267 29 1 1.6792 -0.3022 4.2569 30 1 2.6425 -1.7693 3.8846 31 1 6.4420 1.7320 1.6534 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307184664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:58 Heat of formation + Delta-G solvation = -52.657535 kcal Electronic energy + Delta-G solvation = -13042.890451 eV Core-core repulsion = 10902.850470 eV Total energy + Delta-G solvation = -2140.039981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.26160 -37.40761 -34.49555 -32.70780 -30.15437 -29.44916 -26.15896 -24.48704 -23.15612 -21.87537 -19.11310 -18.68509 -17.06724 -16.83460 -16.48699 -15.52008 -15.21228 -14.57788 -14.07746 -13.79824 -13.56013 -13.15573 -13.11221 -12.86009 -12.65770 -12.38936 -12.20752 -11.93249 -11.66725 -11.51850 -11.07495 -10.96467 -10.77496 -10.62726 -9.79205 -8.18666 -6.39712 1.37619 1.39047 1.51989 2.38128 3.00543 3.46876 3.74030 3.74957 3.94716 4.13001 4.34736 4.39742 4.50608 4.59201 4.76938 4.77889 4.86605 4.93432 5.00064 5.08446 5.11209 5.20362 5.26457 5.37898 5.44972 5.65035 5.69024 5.73583 6.14609 6.58985 7.00540 7.36163 8.90085 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.054321 B = 0.011051 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.330313 B = 2533.057987 C = 2742.219583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.134 4.134 3 H 0.038 0.962 4 C -0.123 4.123 5 C -0.124 4.124 6 C 0.054 3.946 7 C -0.133 4.133 8 C -0.142 4.142 9 C 0.202 3.798 10 H -0.013 1.013 11 C -0.555 4.555 12 H 0.067 0.933 13 C 0.019 3.981 14 N -0.904 5.904 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.281 1.281 18 H -0.274 1.274 19 O -0.371 6.371 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 -4.770 -2.704 11.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 H 0.056 0.944 4 C -0.160 4.160 5 C -0.161 4.161 6 C 0.014 3.986 7 C -0.170 4.170 8 C -0.180 4.180 9 C 0.146 3.854 10 H 0.005 0.995 11 C -0.592 4.592 12 H 0.085 0.915 13 C -0.182 4.182 14 N -0.541 5.541 15 Si 0.789 3.211 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.199 1.199 19 O -0.291 6.291 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.498 -4.691 -2.932 10.992 hybrid contribution 1.167 0.466 0.411 1.322 sum -8.332 -4.225 -2.521 9.676 Atomic orbital electron populations 1.21554 0.90834 1.03124 1.02161 1.22873 0.97681 0.97395 0.97326 0.94360 1.22732 1.00025 0.96406 0.96846 1.23085 1.02533 0.95820 0.94693 1.22987 0.85736 0.96189 0.93724 1.22849 0.98138 1.02862 0.93146 1.23116 0.96849 0.99880 0.98172 1.20561 0.94110 0.90502 0.80185 0.99518 1.21503 0.96463 1.33562 1.07658 0.91484 1.26028 1.02939 0.93703 0.95570 1.70201 1.30218 1.32388 1.21335 0.85419 0.78604 0.78249 0.78815 1.18354 1.20632 1.19920 1.89035 1.24712 1.79458 1.35868 0.92008 0.91405 0.90461 0.93169 0.88847 0.92932 0.86349 0.89357 0.89296 0.90922 0.92196 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.80 71.98 0.63 -2.42 16 2 C -0.13 -4.83 4.35 -10.44 -0.05 -4.87 16 3 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -4.11 7.64 31.20 0.24 -3.87 16 5 C -0.12 -4.15 7.12 30.94 0.22 -3.93 16 6 C 0.05 2.23 1.31 -10.52 -0.01 2.21 16 7 C -0.13 -4.66 6.02 31.44 0.19 -4.47 16 8 C -0.14 -6.09 6.56 31.97 0.21 -5.88 16 9 C 0.20 11.14 3.17 30.55 0.10 11.24 16 10 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 11 C -0.55 -32.80 8.83 25.60 0.23 -32.57 16 12 H 0.07 3.80 7.78 -2.91 -0.02 3.77 16 13 C 0.02 1.14 5.42 84.66 0.46 1.60 16 14 N -0.90 -56.86 12.94 21.45 0.28 -56.58 16 15 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 O -0.37 -20.62 10.52 -148.98 -1.57 -22.19 16 20 H 0.06 1.54 6.33 -2.39 -0.02 1.52 16 21 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 23 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 25 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.12 2.99 7.68 -2.39 -0.02 2.97 16 27 H 0.09 2.71 5.73 -2.39 -0.01 2.69 16 28 H 0.09 2.61 7.93 -2.39 -0.02 2.59 16 29 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -69.51 249.71 4.04 -65.47 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.09 Total: 8.85 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 2.21 Total: -42.96 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.58 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.57 Total: -22.19 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.51 4.04 -65.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307184664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.810 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds