Wall clock time and date at job start Mon Mar 30 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48500 * 109.46944 * 90.00140 * 3 2 1 5 5 H 1.48493 * 109.47411 * 209.99904 * 3 2 1 6 6 H 1.48498 * 109.47030 * 330.00223 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00400 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99785 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.35901 * 57.67372 * 9 7 2 11 11 C 1.55930 * 110.40172 * 180.02562 * 9 7 2 12 12 H 1.09000 * 115.91925 * 318.75493 * 11 9 7 13 13 C 1.55931 * 104.49549 * 189.87966 * 11 9 7 14 14 C 1.56525 * 103.72467 * 289.18023 * 13 11 9 15 15 C 1.55926 * 104.82258 * 0.40880 * 14 13 11 16 16 H 1.09010 * 116.52780 * 199.33218 * 15 14 13 17 17 C 1.56946 * 100.64951 * 85.01171 * 11 9 7 18 18 C 1.54579 * 110.40342 * 295.22099 * 9 7 2 19 19 H 1.09002 * 110.40210 * 0.02562 * 18 9 7 20 20 C 1.53008 * 110.40308 * 122.41809 * 18 9 7 21 21 O 1.42898 * 109.47129 * 178.85768 * 20 18 9 22 22 H 0.97003 * 119.99469 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.40314 * 48.51745 * 13 11 9 24 24 H 1.09009 * 110.39560 * 170.92900 * 13 11 9 25 25 H 1.08999 * 110.55003 * 241.44353 * 14 13 11 26 26 H 1.09001 * 110.08374 * 119.14053 * 14 13 11 27 27 H 1.09000 * 112.02174 * 170.30424 * 17 11 9 28 28 H 1.08998 * 112.03035 * 296.82136 * 17 11 9 29 29 H 1.09002 * 109.46922 * 298.86193 * 20 18 9 30 30 H 1.09001 * 109.46985 * 58.85697 * 20 18 9 31 31 H 0.96703 * 113.99414 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5878 -2.5541 -0.8639 11 6 2.2449 -3.7006 -0.0005 12 1 3.1166 -3.5979 -0.6469 13 6 1.3476 -4.9493 -0.2596 14 6 0.5409 -5.1096 1.0721 15 6 1.0306 -3.9392 1.9786 16 1 0.8496 -4.0434 3.0485 17 6 2.5331 -3.8386 1.5360 18 6 0.4474 -2.6574 1.3104 19 1 0.5970 -1.7910 1.9548 20 6 -1.0400 -2.8454 1.0049 21 8 -1.7596 -3.0161 2.2277 22 1 -0.4849 0.8401 0.0004 23 1 0.6840 -4.7714 -1.1057 24 1 1.9647 -5.8300 -0.4380 25 1 0.7605 -6.0695 1.5394 26 1 -0.5273 -5.0170 0.8761 27 1 3.0891 -4.7471 1.7676 28 1 3.0204 -2.9521 1.9419 29 1 -1.4171 -1.9671 0.4810 30 1 -1.1736 -3.7273 0.3785 31 1 -2.7113 -3.1405 2.1098 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307207338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:02 Heat of formation + Delta-G solvation = -55.415540 kcal Electronic energy + Delta-G solvation = -13286.247328 eV Core-core repulsion = 11146.087751 eV Total energy + Delta-G solvation = -2140.159577 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44287 -35.52160 -32.82080 -29.55643 -28.86232 -27.39875 -25.03778 -22.49419 -20.63491 -18.86333 -17.38208 -16.76015 -15.81377 -15.12020 -14.65530 -14.30320 -13.75030 -12.88530 -12.16589 -11.90992 -11.26834 -11.00808 -10.98289 -10.76089 -10.63021 -10.34588 -10.25118 -10.02362 -9.87743 -9.53665 -9.17904 -8.94173 -8.85423 -8.47427 -8.27146 -5.97643 -4.00386 3.32748 3.39639 3.42522 4.46767 5.17356 5.39797 5.44801 5.51394 5.60264 6.04912 6.08681 6.24403 6.30841 6.34528 6.42274 6.59208 6.62783 6.72110 6.80796 6.88865 7.01713 7.04075 7.18265 7.28227 7.58756 7.67846 7.91784 8.01275 8.47913 8.52286 9.02277 9.63335 11.10355 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038609 B = 0.014799 C = 0.012081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.048911 B = 1891.504719 C = 2317.054456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.062 3.938 10 H 0.028 0.972 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.121 4.121 14 C -0.123 4.123 15 C -0.102 4.102 16 H 0.079 0.921 17 C -0.117 4.117 18 C -0.054 4.054 19 H 0.072 0.928 20 C 0.078 3.922 21 O -0.582 6.582 22 H 0.259 0.741 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -6.749 1.122 6.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.043 3.957 10 H 0.046 0.954 11 C -0.120 4.120 12 H 0.098 0.902 13 C -0.159 4.159 14 C -0.160 4.160 15 C -0.120 4.120 16 H 0.097 0.903 17 C -0.155 4.155 18 C -0.073 4.073 19 H 0.091 0.909 20 C 0.001 3.999 21 O -0.385 6.385 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.147 -6.548 1.348 6.687 hybrid contribution -0.194 0.917 -0.249 0.970 sum -0.341 -5.631 1.099 5.747 Atomic orbital electron populations 1.69892 1.05814 1.26322 1.50619 1.24957 0.94824 0.98910 0.95236 0.86658 0.79898 0.83780 0.78024 1.20805 1.20015 1.21388 1.21170 0.92896 0.90418 1.50277 0.92631 1.19690 0.91941 0.91508 0.92532 0.95365 1.23596 0.97551 0.95811 0.95062 0.90186 1.22949 0.98206 0.97798 0.96906 1.23034 0.99902 0.97288 0.95787 1.23492 0.95288 0.96204 0.96998 0.90309 1.23441 0.95945 0.99398 0.96678 1.22186 0.90679 0.95101 0.99374 0.90948 1.22695 0.93707 0.98877 0.84602 1.86497 1.22089 1.96094 1.33843 0.93152 0.92459 0.93618 0.93706 0.91592 0.93706 0.91262 0.91361 0.95288 0.79767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.47 55.43 0.64 -24.33 16 2 C 0.06 1.71 5.16 -17.82 -0.09 1.61 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -13.80 8.11 -34.44 -0.28 -14.08 16 8 H 0.06 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.06 1.51 1.82 -89.38 -0.16 1.35 16 10 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 11 C -0.10 -2.13 4.50 -85.35 -0.38 -2.51 16 12 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 13 C -0.12 -2.21 6.36 -23.27 -0.15 -2.36 16 14 C -0.12 -2.24 5.92 -23.27 -0.14 -2.38 16 15 C -0.10 -2.07 4.71 -85.38 -0.40 -2.47 16 16 H 0.08 1.57 8.14 -51.92 -0.42 1.15 16 17 C -0.12 -2.34 6.35 -22.46 -0.14 -2.48 16 18 C -0.05 -1.28 1.89 -88.25 -0.17 -1.45 16 19 H 0.07 1.98 7.48 -51.93 -0.39 1.59 16 20 C 0.08 1.70 5.69 37.16 0.21 1.91 16 21 O -0.58 -11.69 13.43 -35.23 -0.47 -12.16 16 22 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 24 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.21 5.22 -51.93 -0.27 0.93 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.47 7.95 -51.93 -0.41 1.05 16 29 H 0.07 1.66 6.97 -51.93 -0.36 1.30 16 30 H 0.03 0.59 5.58 -51.93 -0.29 0.30 16 31 H 0.36 5.33 9.12 45.56 0.42 5.75 16 LS Contribution 240.64 15.07 3.63 3.63 Total: -1.00 -28.64 240.64 -6.69 -35.33 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.76 Total: 4.08 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -1.70 Total: -22.86 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.64 Total: -24.33 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.47 Total: -12.16 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.64 -6.69 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307207338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.083 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds