Wall clock time and date at job start Mon Mar 30 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48500 * 109.46944 * 90.00140 * 3 2 1 5 5 H 1.48493 * 109.47411 * 209.99904 * 3 2 1 6 6 H 1.48498 * 109.47030 * 330.00223 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00400 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99785 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.35901 * 57.67372 * 9 7 2 11 11 C 1.55930 * 110.40172 * 180.02562 * 9 7 2 12 12 H 1.09000 * 115.91925 * 318.75493 * 11 9 7 13 13 C 1.55931 * 104.49549 * 189.87966 * 11 9 7 14 14 C 1.56525 * 103.72467 * 289.18023 * 13 11 9 15 15 C 1.55926 * 104.82258 * 0.40880 * 14 13 11 16 16 H 1.09010 * 116.52780 * 199.33218 * 15 14 13 17 17 C 1.56946 * 100.64951 * 85.01171 * 11 9 7 18 18 C 1.54579 * 110.40342 * 295.22099 * 9 7 2 19 19 H 1.09002 * 110.40210 * 0.02562 * 18 9 7 20 20 C 1.53008 * 110.40308 * 122.41809 * 18 9 7 21 21 O 1.42898 * 109.47129 * 178.85768 * 20 18 9 22 22 H 0.97003 * 119.99469 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.40314 * 48.51745 * 13 11 9 24 24 H 1.09009 * 110.39560 * 170.92900 * 13 11 9 25 25 H 1.08999 * 110.55003 * 241.44353 * 14 13 11 26 26 H 1.09001 * 110.08374 * 119.14053 * 14 13 11 27 27 H 1.09000 * 112.02174 * 170.30424 * 17 11 9 28 28 H 1.08998 * 112.03035 * 296.82136 * 17 11 9 29 29 H 1.09002 * 109.46922 * 298.86193 * 20 18 9 30 30 H 1.09001 * 109.46985 * 58.85697 * 20 18 9 31 31 H 0.96703 * 113.99414 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5878 -2.5541 -0.8639 11 6 2.2449 -3.7006 -0.0005 12 1 3.1166 -3.5979 -0.6469 13 6 1.3476 -4.9493 -0.2596 14 6 0.5409 -5.1096 1.0721 15 6 1.0306 -3.9392 1.9786 16 1 0.8496 -4.0434 3.0485 17 6 2.5331 -3.8386 1.5360 18 6 0.4474 -2.6574 1.3104 19 1 0.5970 -1.7910 1.9548 20 6 -1.0400 -2.8454 1.0049 21 8 -1.7596 -3.0161 2.2277 22 1 -0.4849 0.8401 0.0004 23 1 0.6840 -4.7714 -1.1057 24 1 1.9647 -5.8300 -0.4380 25 1 0.7605 -6.0695 1.5394 26 1 -0.5273 -5.0170 0.8761 27 1 3.0891 -4.7471 1.7676 28 1 3.0204 -2.9521 1.9419 29 1 -1.4171 -1.9671 0.4810 30 1 -1.1736 -3.7273 0.3785 31 1 -2.7113 -3.1405 2.1098 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307207338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:02 Heat of formation + Delta-G solvation = -74.230357 kcal Electronic energy + Delta-G solvation = -13287.063200 eV Core-core repulsion = 11146.087751 eV Total energy + Delta-G solvation = -2140.975449 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.11815 -37.16450 -34.85460 -31.32354 -30.60243 -28.98781 -26.93755 -24.32295 -22.30126 -20.51889 -19.11019 -18.63318 -17.62263 -16.88201 -16.28756 -16.19416 -15.49809 -14.55521 -13.99403 -13.59864 -13.07369 -12.93361 -12.72133 -12.56720 -12.29324 -12.07011 -11.89080 -11.69419 -11.53308 -11.28748 -10.91791 -10.79074 -10.55837 -10.46762 -10.16088 -8.07398 -6.16293 1.39413 1.41015 1.49993 2.44502 3.19956 3.68792 3.86453 3.93307 4.03408 4.42160 4.54147 4.65746 4.73703 4.76159 4.86163 4.90503 5.09086 5.10880 5.17614 5.23324 5.30884 5.43391 5.53050 5.60770 5.77306 5.82736 5.92778 6.00522 6.45663 6.93378 7.07103 7.49758 8.98719 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.038609 B = 0.014799 C = 0.012081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.048911 B = 1891.504719 C = 2317.054456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.056 3.944 10 H 0.000 1.000 11 C -0.105 4.105 12 H 0.081 0.919 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.100 4.100 16 H 0.084 0.916 17 C -0.111 4.111 18 C -0.053 4.053 19 H 0.022 0.978 20 C 0.089 3.911 21 O -0.589 6.589 22 H 0.257 0.743 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 -8.395 1.353 8.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.068 0.932 9 C 0.037 3.963 10 H 0.018 0.982 11 C -0.123 4.123 12 H 0.099 0.901 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.118 4.118 16 H 0.102 0.898 17 C -0.148 4.148 18 C -0.073 4.073 19 H 0.041 0.959 20 C 0.012 3.988 21 O -0.396 6.396 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.318 -8.202 1.578 8.359 hybrid contribution -0.370 1.449 -0.307 1.526 sum -0.053 -6.754 1.271 6.873 Atomic orbital electron populations 1.70025 1.06875 1.26729 1.51324 1.25675 0.95664 1.01987 0.95203 0.85742 0.78961 0.80158 0.77890 1.20758 1.19282 1.21040 1.21524 0.92890 0.92081 1.49997 0.93189 1.19665 0.92427 0.92300 0.91864 0.98218 1.23584 0.97239 0.95468 0.96031 0.90079 1.22908 0.97941 0.97417 0.96879 1.22991 0.99664 0.97488 0.95096 1.23483 0.95416 0.95400 0.97527 0.89784 1.23395 0.95874 0.99954 0.95600 1.21978 0.92058 0.95064 0.98166 0.95914 1.22393 0.92892 0.98366 0.85113 1.86430 1.24232 1.95995 1.32949 0.93405 0.92927 0.90466 0.90619 0.91734 0.90350 0.93534 0.94597 0.93172 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.79 11.47 21.45 0.25 -52.54 16 2 C 0.01 0.76 5.16 84.65 0.44 1.20 16 3 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.53 -29.23 8.11 25.60 0.21 -29.03 16 8 H 0.05 2.75 7.77 -2.91 -0.02 2.72 16 9 C 0.06 2.78 1.82 -9.99 -0.02 2.76 16 10 H 0.00 -0.02 7.41 -2.38 -0.02 -0.03 16 11 C -0.10 -4.24 4.50 -7.38 -0.03 -4.27 16 12 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 13 C -0.11 -3.81 6.36 32.84 0.21 -3.60 16 14 C -0.12 -3.78 5.92 32.84 0.19 -3.59 16 15 C -0.10 -3.90 4.71 -7.40 -0.03 -3.93 16 16 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 17 C -0.11 -4.21 6.35 33.36 0.21 -3.99 16 18 C -0.05 -2.54 1.89 -9.26 -0.02 -2.56 16 19 H 0.02 1.27 7.48 -2.39 -0.02 1.25 16 20 C 0.09 3.91 5.69 71.98 0.41 4.32 16 21 O -0.59 -23.10 13.43 -148.98 -2.00 -25.10 16 22 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.05 1.80 7.82 -2.39 -0.02 1.79 16 24 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 2.14 5.22 -2.39 -0.01 2.13 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.95 7.95 -2.39 -0.02 1.93 16 29 H 0.04 1.80 6.97 -2.39 -0.02 1.78 16 30 H 0.05 1.99 5.58 -2.39 -0.01 1.97 16 31 H 0.38 10.76 9.12 -74.06 -0.68 10.09 16 Total: -1.00 -62.25 240.64 2.28 -59.97 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.44 Total: 13.79 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 1.57 Total: -42.68 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.25 Total: -52.54 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -2.00 Total: -25.10 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.25 2.28 -59.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307207338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds