Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30524 * 126.34633 * 2 1 4 4 N 1.28596 * 109.67024 * 179.97438 * 3 2 1 5 5 C 1.30516 * 109.67733 * 359.72122 * 4 3 2 6 6 N 1.35493 * 107.30407 * 0.44097 * 5 4 3 7 7 C 1.46506 * 126.98087 * 179.83163 * 6 5 4 8 8 C 1.52997 * 109.47289 * 264.68765 * 7 6 5 9 9 N 1.46496 * 109.46953 * 180.02562 * 8 7 6 10 10 C 1.36942 * 120.00106 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99638 * 359.97438 * 10 9 8 12 12 C 1.38805 * 120.00269 * 180.02562 * 10 9 8 13 13 N 1.31615 * 120.00146 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00181 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47340 * 89.99343 * 14 12 10 16 16 H 1.48501 * 109.47310 * 209.99533 * 14 12 10 17 17 H 1.48505 * 109.47077 * 329.99551 * 14 12 10 18 18 H 1.08992 * 109.47553 * 270.04359 * 1 2 3 19 19 H 1.09007 * 109.47265 * 30.04580 * 1 2 3 20 20 H 1.09007 * 109.47347 * 150.03667 * 1 2 3 21 21 H 1.08007 * 126.35319 * 180.29405 * 5 4 3 22 22 H 1.09001 * 109.47060 * 24.69034 * 7 6 5 23 23 H 1.09004 * 109.47073 * 144.68523 * 7 6 5 24 24 H 1.09001 * 109.46832 * 299.99854 * 8 7 6 25 25 H 1.08996 * 109.46952 * 59.99873 * 8 7 6 26 26 H 0.96994 * 120.00508 * 359.97438 * 9 8 7 27 27 H 0.97000 * 120.00516 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6823 0.0005 5 6 3.5807 -0.6211 0.0069 6 7 2.3100 -1.0913 0.0006 7 6 1.8896 -2.4947 0.0007 8 6 1.6235 -2.9476 -1.4363 9 7 1.2025 -4.3507 -1.4361 10 6 0.9079 -4.9775 -2.6175 11 1 0.9855 -4.4371 -3.5494 12 6 0.5086 -6.3068 -2.6172 13 7 0.4135 -6.9652 -1.4816 14 14 0.1060 -7.1615 -4.2287 15 1 1.3352 -7.7892 -4.7768 16 1 -0.9205 -8.2080 -3.9911 17 1 -0.4168 -6.1667 -5.1995 18 1 -0.3634 0.0008 1.0276 19 1 -0.3634 0.8896 -0.5146 20 1 -0.3634 -0.8904 -0.5133 21 1 4.4829 -1.2148 0.0133 22 1 2.6774 -3.1099 0.4355 23 1 0.9787 -2.6011 0.5898 24 1 0.8356 -2.3323 -1.8710 25 1 2.5343 -2.8411 -2.0254 26 1 1.1332 -4.8362 -0.5992 27 1 0.1348 -7.8943 -1.4814 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390908675.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = 65.498532 kcal Electronic energy + Delta-G solvation = -11933.738268 eV Core-core repulsion = 9727.574326 eV Total energy + Delta-G solvation = -2206.163942 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.09092 -37.63895 -35.65821 -33.33568 -33.08890 -29.71934 -28.55682 -25.96107 -23.76731 -23.15839 -21.68156 -19.41323 -17.90139 -17.22772 -16.57376 -16.20385 -15.75784 -15.37644 -15.00633 -14.62440 -13.83301 -13.46654 -13.26744 -13.06115 -12.98036 -12.63431 -12.53280 -12.16098 -11.91025 -11.36793 -11.13294 -11.01442 -10.16531 -9.11214 -8.01148 -5.31819 0.85417 1.47425 1.48758 1.52706 1.58271 1.85349 2.53711 3.33564 3.44121 3.61588 3.75516 3.92196 4.10533 4.14457 4.35972 4.55860 4.66415 4.77935 4.90776 4.98078 5.10438 5.29001 5.45329 5.93110 6.20661 7.28959 7.71421 7.95861 8.21835 9.21356 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.070370 B = 0.006986 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.802727 B = 4007.096782 C = 4074.632739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.176 3.824 3 N -0.342 5.342 4 N -0.343 5.343 5 C 0.158 3.842 6 N -0.466 5.466 7 C 0.111 3.889 8 C 0.146 3.854 9 N -0.738 5.738 10 C -0.252 4.252 11 H 0.073 0.927 12 C -0.063 4.063 13 N -0.963 5.963 14 Si 0.971 3.029 15 H -0.287 1.287 16 H -0.293 1.293 17 H -0.271 1.271 18 H 0.104 0.896 19 H 0.101 0.899 20 H 0.085 0.915 21 H 0.251 0.749 22 H 0.119 0.881 23 H 0.112 0.888 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.381 0.619 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 8.132 3.824 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 N -0.183 5.183 4 N -0.181 5.181 5 C -0.131 4.131 6 N -0.156 5.156 7 C -0.012 4.012 8 C 0.019 3.981 9 N -0.382 5.382 10 C -0.384 4.384 11 H 0.091 0.909 12 C -0.256 4.256 13 N -0.612 5.612 14 Si 0.799 3.201 15 H -0.214 1.214 16 H -0.220 1.220 17 H -0.196 1.196 18 H 0.123 0.877 19 H 0.120 0.880 20 H 0.104 0.896 21 H 0.267 0.733 22 H 0.137 0.863 23 H 0.130 0.870 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.214 0.786 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.473 9.569 3.639 10.343 hybrid contribution -0.426 -2.178 -0.571 2.291 sum 1.047 7.391 3.068 8.071 Atomic orbital electron populations 1.20408 0.81667 1.05337 1.05369 1.25522 0.98560 0.82602 1.02547 1.74129 0.97052 1.25495 1.21591 1.74100 1.12757 1.10782 1.20488 1.27107 0.89985 0.92911 1.03076 1.46384 1.07013 1.08883 1.53321 1.22077 1.04231 0.76395 0.98487 1.20919 0.97297 0.85802 0.94130 1.42248 1.81773 1.07767 1.06425 1.19502 1.37471 0.94072 0.87351 0.90943 1.25488 1.02601 0.97584 0.99973 1.69768 1.54956 1.10419 1.26072 0.85197 0.77295 0.78153 0.79420 1.21400 1.21964 1.19633 0.87730 0.88046 0.89623 0.73280 0.86313 0.86996 0.95758 0.96044 0.78621 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.14 71.23 0.72 -0.67 15 2 C 0.18 4.96 8.03 137.98 1.11 6.07 15 3 N -0.34 -11.62 12.21 -50.16 -0.61 -12.23 15 4 N -0.34 -11.43 12.21 -59.99 -0.73 -12.17 15 5 C 0.16 4.16 12.74 180.11 2.29 6.45 15 6 N -0.47 -12.28 2.75 -518.69 -1.42 -13.70 15 7 C 0.11 2.80 5.93 86.38 0.51 3.31 15 8 C 0.15 5.06 6.58 86.38 0.57 5.62 15 9 N -0.74 -33.39 5.60 -343.47 -1.92 -35.31 15 10 C -0.25 -13.17 9.99 84.03 0.84 -12.33 15 11 H 0.07 3.70 7.83 -2.91 -0.02 3.68 15 12 C -0.06 -3.41 5.50 84.86 0.47 -2.94 15 13 N -0.96 -54.97 13.06 21.65 0.28 -54.68 15 14 Si 0.97 43.72 29.55 68.60 2.03 45.75 15 15 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 16 H -0.29 -13.28 7.11 99.48 0.71 -12.58 15 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 18 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 19 H 0.10 1.87 8.14 -2.38 -0.02 1.85 15 20 H 0.09 1.73 7.62 -2.38 -0.02 1.71 15 21 H 0.25 4.34 8.06 -2.91 -0.02 4.32 15 22 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.11 2.58 8.02 -2.38 -0.02 2.56 15 24 H 0.02 0.87 7.82 -2.39 -0.02 0.85 15 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 26 H 0.38 17.83 7.67 -92.71 -0.71 17.12 15 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 15 Total: -1.00 -66.58 243.52 4.59 -61.99 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.46 Total: 14.85 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.51 Total: 5.51 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -4.41 Total: -128.10 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.58 4.59 -61.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390908675.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.490 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds