Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47231 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.47261 * 29.99963 * 3 2 1 6 6 H 1.48502 * 109.47188 * 149.99880 * 3 2 1 7 7 C 1.40309 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.40075 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.35029 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.50706 * 119.99887 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47238 * 125.00073 * 11 10 9 13 13 H 1.09001 * 109.52398 * 304.87272 * 12 11 10 14 14 C 1.53172 * 109.52284 * 184.68521 * 12 11 10 15 15 C 1.53181 * 109.03884 * 183.11525 * 14 12 11 16 16 C 1.53085 * 109.16416 * 56.97632 * 15 14 12 17 17 O 1.42906 * 109.41982 * 302.39522 * 16 15 14 18 18 C 1.42907 * 114.09456 * 61.15267 * 17 16 15 19 19 H 0.97002 * 119.99962 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99919 * 0.02562 * 9 7 2 21 21 H 1.07997 * 120.00043 * 359.97438 * 10 9 7 22 22 H 1.09001 * 109.46953 * 244.99685 * 11 10 9 23 23 H 1.09000 * 109.47318 * 4.99283 * 11 10 9 24 24 H 1.09003 * 109.54305 * 302.97738 * 14 12 11 25 25 H 1.09004 * 109.54882 * 63.24149 * 14 12 11 26 26 H 1.09002 * 109.51982 * 297.07231 * 15 14 12 27 27 H 1.09003 * 109.52173 * 176.88873 * 15 14 12 28 28 H 1.09000 * 109.48231 * 182.41364 * 16 15 14 29 29 H 1.09005 * 109.49363 * 62.38052 * 16 15 14 30 30 H 1.08998 * 109.47988 * 178.86267 * 18 17 16 31 31 H 1.09000 * 109.49022 * 58.83930 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4384 2.6527 0.7000 6 1 3.5385 1.4402 0.7001 7 6 2.0085 -1.2151 0.0005 8 1 3.0885 -1.2151 0.0001 9 6 1.3081 -2.4282 0.0005 10 6 1.9833 -3.5976 0.0005 11 6 1.2297 -4.9027 0.0000 12 6 1.6917 -5.7578 -1.1816 13 1 1.5782 -5.1926 -2.1067 14 6 0.8459 -7.0329 -1.2523 15 6 1.3678 -7.9163 -2.3897 16 6 2.8506 -8.2150 -2.1542 17 8 3.5749 -6.9861 -2.0678 18 6 3.1620 -6.1399 -0.9927 19 1 -0.4850 0.8401 -0.0004 20 1 0.2281 -2.4281 -0.0003 21 1 3.0632 -3.5976 0.0001 22 1 1.4238 -5.4347 0.9313 23 1 0.1615 -4.7055 -0.0898 24 1 0.9202 -7.5725 -0.3081 25 1 -0.1948 -6.7702 -1.4427 26 1 1.2475 -7.3956 -3.3398 27 1 0.8069 -8.8507 -2.4119 28 1 3.2381 -8.8077 -2.9828 29 1 2.9663 -8.7712 -1.2239 30 1 3.7738 -5.2378 -0.9846 31 1 3.2816 -6.6686 -0.0471 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -88.095630 kcal Electronic energy + Delta-G solvation = -12132.367477 eV Core-core repulsion = 9990.790785 eV Total energy + Delta-G solvation = -2141.576692 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30658 -36.67436 -35.48068 -33.69214 -32.01203 -28.60809 -25.91089 -25.65067 -23.02981 -20.94522 -20.17581 -18.99909 -17.11826 -17.06110 -16.58001 -15.73130 -15.35088 -15.09402 -14.61707 -14.01388 -13.65085 -13.47704 -13.28918 -13.04464 -12.48754 -12.30968 -12.07175 -11.90997 -11.84861 -11.54562 -11.40906 -11.17700 -10.95155 -10.31288 -9.67185 -8.70091 -6.31727 1.24209 1.35480 1.50341 1.95947 2.20926 3.01994 3.36572 3.92586 3.94849 3.99022 4.10538 4.34790 4.57472 4.62844 4.73619 4.79825 4.85893 4.88809 5.00125 5.08826 5.14663 5.21375 5.28151 5.31827 5.49833 5.57113 5.95732 6.31370 6.37020 6.62173 7.02757 7.20985 8.36167 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.070786 B = 0.006507 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.465495 B = 4302.025711 C = 4519.501043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.407 4.407 11 C -0.029 4.029 12 C -0.110 4.110 13 H 0.048 0.952 14 C -0.117 4.117 15 C -0.151 4.151 16 C 0.052 3.948 17 O -0.409 6.409 18 C 0.076 3.924 19 H 0.290 0.710 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.046 0.954 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -10.901 -2.514 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.429 4.429 11 C -0.067 4.067 12 C -0.129 4.129 13 H 0.066 0.934 14 C -0.155 4.155 15 C -0.188 4.188 16 C -0.024 4.024 17 O -0.328 6.328 18 C 0.000 4.000 19 H 0.100 0.900 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.924 -10.710 -2.636 11.196 hybrid contribution -0.115 0.911 0.202 0.940 sum 1.809 -9.799 -2.434 10.257 Atomic orbital electron populations 1.69621 1.09186 1.31010 1.38827 1.27041 0.95716 1.05267 0.90652 0.85103 0.78855 0.75458 0.79633 1.18507 1.18702 1.18325 1.19800 0.94507 0.92248 1.46718 0.91876 1.20012 0.95679 0.93441 0.90902 1.22279 0.96212 0.93074 1.31341 1.19932 0.97056 0.93768 0.95896 1.21695 0.96067 0.96330 0.98829 0.93355 1.21680 0.99197 0.95111 0.99465 1.22178 0.97014 1.01012 0.98614 1.22814 0.91462 0.85553 1.02612 1.87881 1.60724 1.31745 1.52454 1.22518 0.94810 0.93531 0.89171 0.89953 0.92411 0.91374 0.93573 0.94567 0.90955 0.91689 0.92158 0.88418 0.87271 0.92180 0.90452 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.73 12.86 21.89 0.28 -47.45 16 2 C 0.03 1.38 5.50 85.37 0.47 1.85 16 3 Si 0.99 40.42 29.56 68.60 2.03 42.44 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -29.21 9.05 23.22 0.21 -29.00 16 8 H 0.06 3.61 7.85 -2.91 -0.02 3.58 16 9 C 0.02 1.14 9.00 21.98 0.20 1.33 16 10 C -0.41 -20.93 8.78 24.95 0.22 -20.71 16 11 C -0.03 -1.22 5.15 29.85 0.15 -1.07 16 12 C -0.11 -3.98 2.38 -10.71 -0.03 -4.00 16 13 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.12 -3.25 5.31 30.71 0.16 -3.08 16 15 C -0.15 -3.45 6.14 30.68 0.19 -3.27 16 16 C 0.05 1.21 6.84 72.01 0.49 1.71 16 17 O -0.41 -13.30 10.77 -148.98 -1.60 -14.90 16 18 C 0.08 2.62 5.90 72.01 0.42 3.04 16 19 H 0.29 14.43 8.29 -92.71 -0.77 13.66 16 20 H 0.06 3.51 7.27 -2.91 -0.02 3.49 16 21 H 0.07 3.55 7.01 -2.91 -0.02 3.53 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 2.96 6.84 -2.39 -0.02 2.94 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -61.74 256.96 4.28 -57.46 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.08 Total: 15.65 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 2.49 Total: -53.20 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.28 Total: -47.45 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.60 Total: -14.90 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -61.74 4.28 -57.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds