Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48502 * 109.47380 * 270.00251 * 3 2 1 5 5 H 1.48501 * 109.47299 * 30.00100 * 3 2 1 6 6 H 1.48504 * 109.47435 * 150.00023 * 3 2 1 7 7 C 1.37878 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99829 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00028 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47109 * 60.00256 * 9 7 2 11 11 O 1.42899 * 109.47102 * 299.99953 * 9 7 2 12 12 C 1.53005 * 109.47101 * 180.02562 * 9 7 2 13 13 H 1.09001 * 109.61564 * 59.63296 * 12 9 7 14 14 C 1.53232 * 109.78048 * 299.17438 * 12 9 7 15 15 C 1.52872 * 108.62849 * 165.72367 * 14 12 9 16 16 C 1.52077 * 110.48674 * 54.90245 * 15 14 12 17 17 H 1.08999 * 114.63769 * 194.39085 * 16 15 14 18 18 C 1.52301 * 119.83867 * 49.56533 * 16 15 14 19 19 C 1.52067 * 120.01694 * 338.31244 * 16 15 14 20 20 H 1.08998 * 117.25543 * 216.66570 * 19 16 15 21 21 C 1.52713 * 120.52683 * 5.29479 * 19 16 15 22 22 H 0.96996 * 119.99607 * 359.97438 * 1 2 3 23 23 H 0.96694 * 114.00086 * 299.99754 * 11 9 7 24 24 H 1.08998 * 109.57083 * 45.99015 * 14 12 9 25 25 H 1.09003 * 109.61609 * 285.47902 * 14 12 9 26 26 H 1.09002 * 109.26936 * 294.64958 * 15 14 12 27 27 H 1.08996 * 109.26712 * 175.14758 * 15 14 12 28 28 H 1.08994 * 117.53852 * 357.56009 * 18 16 15 29 29 H 1.09001 * 117.53429 * 142.80921 * 18 16 15 30 30 H 1.08993 * 109.35703 * 98.73789 * 21 19 16 31 31 H 1.09005 * 109.35670 * 218.45808 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 0.8895 11 8 3.9874 -0.5212 -1.1675 12 6 4.0215 -2.6366 0.0001 13 1 3.6538 -3.1548 -0.8856 14 6 3.5322 -3.3595 1.2594 15 6 3.7407 -4.8623 1.0719 16 6 5.1918 -5.1595 0.7276 17 1 5.3708 -6.1627 0.3407 18 6 6.3088 -4.5635 1.5741 19 6 6.0727 -4.0688 0.1387 20 1 6.7992 -4.3676 -0.6169 21 6 5.5503 -2.6405 -0.0005 22 1 -0.4849 0.8400 0.0004 23 1 3.7018 -0.9253 -1.9982 24 1 2.4727 -3.1530 1.4105 25 1 4.1016 -3.0160 2.1231 26 1 3.0996 -5.2164 0.2646 27 1 3.4766 -5.3799 1.9941 28 1 6.0234 -3.8989 2.3896 29 1 7.1880 -5.1816 1.7559 30 1 5.9134 -2.0401 0.8335 31 1 5.9103 -2.2138 -0.9367 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700100245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -48.737507 kcal Electronic energy + Delta-G solvation = -12881.813796 eV Core-core repulsion = 10741.943800 eV Total energy + Delta-G solvation = -2139.869996 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30344 -36.13119 -32.53118 -32.14156 -30.28428 -27.28082 -24.04353 -22.84538 -20.85950 -20.06752 -18.16520 -17.03075 -15.91376 -14.91453 -14.47316 -14.04076 -13.54219 -13.14273 -12.94669 -12.52098 -12.20755 -11.77695 -11.67172 -11.16631 -10.92207 -10.58282 -10.47455 -10.31413 -10.06533 -9.61473 -9.38394 -9.29834 -8.92228 -8.61830 -8.29012 -6.09450 -4.19473 3.46711 3.50142 3.63403 4.01304 4.53244 4.93581 5.11327 5.15916 5.20295 5.43383 5.57458 5.73694 5.77001 5.93471 5.98548 6.07755 6.20390 6.21055 6.34112 6.41840 6.53403 6.63260 6.75949 6.81445 6.97176 7.11989 7.49417 7.65516 8.33306 8.86717 9.04933 9.55287 11.00895 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.056074 B = 0.011002 C = 0.009882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.219573 B = 2544.327938 C = 2832.838803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.307 1.307 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.193 3.807 10 H 0.057 0.943 11 O -0.588 6.588 12 C -0.097 4.097 13 H 0.064 0.936 14 C -0.111 4.111 15 C -0.088 4.088 16 C -0.138 4.138 17 H 0.089 0.911 18 C -0.188 4.188 19 C -0.145 4.145 20 H 0.093 0.907 21 C -0.082 4.082 22 H 0.264 0.736 23 H 0.360 0.640 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -7.440 1.090 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.125 4.125 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.235 1.235 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.094 0.906 9 C 0.136 3.864 10 H 0.075 0.925 11 O -0.395 6.395 12 C -0.116 4.116 13 H 0.082 0.918 14 C -0.148 4.148 15 C -0.125 4.125 16 C -0.157 4.157 17 H 0.107 0.893 18 C -0.225 4.225 19 C -0.163 4.163 20 H 0.111 0.889 21 C -0.120 4.120 22 H 0.073 0.927 23 H 0.207 0.793 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.927 -6.958 1.549 12.221 hybrid contribution 0.131 0.372 -0.387 0.553 sum 10.058 -6.586 1.162 12.078 Atomic orbital electron populations 1.69965 1.06621 1.27323 1.49380 1.25055 0.94671 0.99954 0.92840 0.86260 0.79181 0.81826 0.78417 1.20575 1.23512 1.19400 1.21606 0.89992 0.94668 1.52936 0.90577 1.19978 0.93720 0.87568 0.85127 0.92540 1.86358 1.77645 1.58593 1.16862 1.21660 0.93096 0.98797 0.98054 0.91797 1.21573 1.03035 0.92871 0.97363 1.20877 0.93118 0.97722 1.00792 1.21828 0.93150 0.97002 1.03683 0.89293 1.23093 0.99883 1.04594 0.94921 1.22289 1.02291 0.96119 0.95625 0.88895 1.21090 0.96695 0.92428 1.01774 0.92663 0.79341 0.89664 0.93059 0.91775 0.92334 0.88776 0.89760 0.92375 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.91 23.48 26.18 -169.99 -4.45 19.03 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.88 6.54 56.52 0.37 -6.51 16 7 C -0.55 -15.18 8.43 -34.44 -0.29 -15.47 16 8 H 0.08 2.22 7.13 -52.49 -0.37 1.85 16 9 C 0.19 4.51 1.90 -27.88 -0.05 4.46 16 10 H 0.06 1.40 7.20 -51.93 -0.37 1.03 16 11 O -0.59 -13.43 10.47 -35.23 -0.37 -13.80 16 12 C -0.10 -1.88 1.88 -90.56 -0.17 -2.05 16 13 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 14 C -0.11 -2.03 4.95 -26.68 -0.13 -2.16 16 15 C -0.09 -1.35 5.93 -27.27 -0.16 -1.51 16 16 C -0.14 -1.95 6.00 -91.92 -0.55 -2.50 16 17 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.19 -2.52 9.66 -26.75 -0.26 -2.78 16 19 C -0.15 -2.12 6.19 -90.90 -0.56 -2.68 16 20 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.08 -1.40 4.90 -26.94 -0.13 -1.53 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.36 7.25 9.04 45.56 0.41 7.66 16 24 H 0.08 1.77 6.40 -51.93 -0.33 1.44 16 25 H 0.05 0.91 7.11 -51.93 -0.37 0.54 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.31 7.26 -51.93 -0.38 0.94 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.06 1.09 7.84 -51.93 -0.41 0.69 16 LS Contribution 243.77 15.07 3.67 3.67 Total: -1.00 -29.81 243.77 -6.72 -36.53 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.94 Total: 5.09 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.41 Total: -24.05 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.37 Total: -13.80 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.45 Total: 19.03 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.81 -6.72 -36.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700100245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.209 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds