Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00246 * 2 1 4 4 H 1.48502 * 109.47380 * 270.00251 * 3 2 1 5 5 H 1.48501 * 109.47299 * 30.00100 * 3 2 1 6 6 H 1.48504 * 109.47435 * 150.00023 * 3 2 1 7 7 C 1.37878 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99829 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00028 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47109 * 60.00256 * 9 7 2 11 11 O 1.42899 * 109.47102 * 299.99953 * 9 7 2 12 12 C 1.53005 * 109.47101 * 180.02562 * 9 7 2 13 13 H 1.09001 * 109.61564 * 59.63296 * 12 9 7 14 14 C 1.53232 * 109.78048 * 299.17438 * 12 9 7 15 15 C 1.52872 * 108.62849 * 165.72367 * 14 12 9 16 16 C 1.52077 * 110.48674 * 54.90245 * 15 14 12 17 17 H 1.08999 * 114.63769 * 194.39085 * 16 15 14 18 18 C 1.52301 * 119.83867 * 49.56533 * 16 15 14 19 19 C 1.52067 * 120.01694 * 338.31244 * 16 15 14 20 20 H 1.08998 * 117.25543 * 216.66570 * 19 16 15 21 21 C 1.52713 * 120.52683 * 5.29479 * 19 16 15 22 22 H 0.96996 * 119.99607 * 359.97438 * 1 2 3 23 23 H 0.96694 * 114.00086 * 299.99754 * 11 9 7 24 24 H 1.08998 * 109.57083 * 45.99015 * 14 12 9 25 25 H 1.09003 * 109.61609 * 285.47902 * 14 12 9 26 26 H 1.09002 * 109.26936 * 294.64958 * 15 14 12 27 27 H 1.08996 * 109.26712 * 175.14758 * 15 14 12 28 28 H 1.08994 * 117.53852 * 357.56009 * 18 16 15 29 29 H 1.09001 * 117.53429 * 142.80921 * 18 16 15 30 30 H 1.08993 * 109.35703 * 98.73789 * 21 19 16 31 31 H 1.09005 * 109.35670 * 218.45808 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 0.8895 11 8 3.9874 -0.5212 -1.1675 12 6 4.0215 -2.6366 0.0001 13 1 3.6538 -3.1548 -0.8856 14 6 3.5322 -3.3595 1.2594 15 6 3.7407 -4.8623 1.0719 16 6 5.1918 -5.1595 0.7276 17 1 5.3708 -6.1627 0.3407 18 6 6.3088 -4.5635 1.5741 19 6 6.0727 -4.0688 0.1387 20 1 6.7992 -4.3676 -0.6169 21 6 5.5503 -2.6405 -0.0005 22 1 -0.4849 0.8400 0.0004 23 1 3.7018 -0.9253 -1.9982 24 1 2.4727 -3.1530 1.4105 25 1 4.1016 -3.0160 2.1231 26 1 3.0996 -5.2164 0.2646 27 1 3.4766 -5.3799 1.9941 28 1 6.0234 -3.8989 2.3896 29 1 7.1880 -5.1816 1.7559 30 1 5.9134 -2.0401 0.8335 31 1 5.9103 -2.2138 -0.9367 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700100245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -68.430521 kcal Electronic energy + Delta-G solvation = -12882.667749 eV Core-core repulsion = 10741.943800 eV Total energy + Delta-G solvation = -2140.723949 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.62323 -37.86790 -34.45506 -33.90788 -31.62375 -29.20546 -25.52074 -24.47334 -22.05662 -21.71975 -19.71219 -18.88913 -17.16466 -16.90617 -16.27979 -15.69718 -15.00993 -14.66591 -14.65362 -14.08677 -13.78781 -13.52199 -13.07712 -12.86443 -12.69304 -12.22101 -11.99570 -11.80345 -11.69694 -11.32286 -11.00406 -10.85145 -10.57555 -10.38823 -10.13465 -8.33779 -6.45767 1.39322 1.41908 1.56719 2.38400 2.91609 3.00380 3.76189 3.88889 3.98015 4.00545 4.25113 4.30088 4.45982 4.49820 4.70221 4.84346 4.89481 4.94804 4.99148 5.10855 5.22716 5.33014 5.35105 5.42845 5.47460 5.49795 5.67897 5.74572 6.14448 6.66587 7.17599 7.35084 8.80240 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.056074 B = 0.011002 C = 0.009882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.219573 B = 2544.327938 C = 2832.838803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.046 0.954 9 C 0.198 3.802 10 H 0.045 0.955 11 O -0.591 6.591 12 C -0.091 4.091 13 H 0.057 0.943 14 C -0.109 4.109 15 C -0.084 4.084 16 C -0.141 4.141 17 H 0.112 0.888 18 C -0.176 4.176 19 C -0.154 4.154 20 H 0.113 0.887 21 C -0.076 4.076 22 H 0.266 0.734 23 H 0.373 0.627 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -8.181 1.052 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.064 0.936 9 C 0.141 3.859 10 H 0.063 0.937 11 O -0.398 6.398 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.147 4.147 15 C -0.122 4.122 16 C -0.159 4.159 17 H 0.130 0.870 18 C -0.213 4.213 19 C -0.172 4.172 20 H 0.131 0.869 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.221 0.779 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.146 -7.709 1.505 14.465 hybrid contribution -0.599 0.560 -0.379 0.903 sum 11.547 -7.150 1.125 13.628 Atomic orbital electron populations 1.70074 1.08114 1.28167 1.51560 1.25817 0.95269 1.03201 0.93044 0.85340 0.77986 0.78298 0.78464 1.20165 1.23228 1.19002 1.21901 0.92276 0.93264 1.51271 0.93604 1.19822 0.91025 0.90106 0.84974 0.93735 1.86285 1.77298 1.58927 1.17290 1.21512 0.95235 0.95935 0.98271 0.92412 1.21488 1.00747 0.95366 0.97069 1.20819 0.94629 0.95187 1.01523 1.21866 0.91995 0.97929 1.04080 0.87019 1.23160 1.00298 1.04117 0.93749 1.22276 1.03129 0.94546 0.97298 0.86903 1.20979 0.94224 0.94519 1.01646 0.92508 0.77865 0.93135 0.92662 0.92147 0.90877 0.89635 0.87238 0.92935 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 2 C 0.03 1.52 5.47 84.66 0.46 1.98 16 3 Si 0.97 48.46 26.18 68.60 1.80 50.25 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.27 -12.97 6.54 99.48 0.65 -12.32 16 7 C -0.55 -30.66 8.43 25.60 0.22 -30.44 16 8 H 0.05 2.79 7.13 -2.91 -0.02 2.77 16 9 C 0.20 9.20 1.90 29.85 0.06 9.25 16 10 H 0.04 2.19 7.20 -2.39 -0.02 2.18 16 11 O -0.59 -26.15 10.47 -148.98 -1.56 -27.71 16 12 C -0.09 -3.45 1.88 -10.76 -0.02 -3.47 16 13 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 14 C -0.11 -3.97 4.95 30.63 0.15 -3.81 16 15 C -0.08 -2.45 5.93 30.25 0.18 -2.27 16 16 C -0.14 -3.49 6.00 -11.64 -0.07 -3.56 16 17 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.18 -4.08 9.66 30.58 0.30 -3.78 16 19 C -0.15 -3.99 6.19 -10.98 -0.07 -4.06 16 20 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 21 C -0.08 -2.43 4.90 30.46 0.15 -2.28 16 22 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.37 14.52 9.04 -74.06 -0.67 13.86 16 24 H 0.05 2.16 6.40 -2.39 -0.02 2.15 16 25 H 0.05 1.93 7.11 -2.39 -0.02 1.91 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.14 7.26 -2.39 -0.02 2.13 16 29 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.72 8.06 -2.39 -0.02 1.70 16 31 H 0.07 2.08 7.84 -2.38 -0.02 2.06 16 Total: -1.00 -63.41 243.77 2.27 -61.14 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.38 Total: 16.88 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 1.35 Total: -42.45 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.56 Total: -27.71 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.80 Total: 50.25 kcal Total: -63.41 2.27 -61.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700100245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.294 kcal (2) G-P(sol) polarization free energy of solvation -63.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds