Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56597 * 2 1 4 4 C 1.53004 * 117.50351 * 214.30543 * 2 1 3 5 5 C 1.53003 * 60.00023 * 252.51197 * 4 2 1 6 6 H 1.08997 * 117.49505 * 252.48530 * 5 4 2 7 7 C 1.53000 * 117.49814 * 107.49011 * 5 4 2 8 8 H 1.08999 * 109.82307 * 350.81742 * 7 5 4 9 9 C 1.54376 * 109.90941 * 111.75662 * 7 5 4 10 10 C 1.55304 * 102.25567 * 140.90833 * 9 7 5 11 11 C 1.54945 * 100.94045 * 325.86882 * 10 9 7 12 12 H 1.09002 * 110.31005 * 277.52751 * 11 10 9 13 13 C 1.50706 * 110.39154 * 155.40188 * 11 10 9 14 14 H 1.07997 * 119.99579 * 1.44254 * 13 11 10 15 15 C 1.37873 * 119.99810 * 181.44821 * 13 11 10 16 16 N 1.31511 * 119.99887 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00156 * 359.97438 * 15 13 11 18 18 H 1.48505 * 109.46949 * 90.00571 * 17 15 13 19 19 H 1.48508 * 109.47299 * 210.00210 * 17 15 13 20 20 H 1.48496 * 109.47483 * 330.00348 * 17 15 13 21 21 O 1.43240 * 109.82727 * 229.93659 * 7 5 4 22 22 H 1.09000 * 109.47173 * 274.31404 * 1 2 3 23 23 H 1.09001 * 109.46962 * 34.31512 * 1 2 3 24 24 H 1.09007 * 109.47108 * 154.31196 * 1 2 3 25 25 H 1.08996 * 117.49936 * 145.01948 * 4 2 1 26 26 H 1.09004 * 117.49135 * 0.02562 * 4 2 1 27 27 H 1.08998 * 110.84711 * 259.10864 * 9 7 5 28 28 H 1.09010 * 110.84382 * 22.71676 * 9 7 5 29 29 H 1.08997 * 111.12440 * 207.95142 * 10 9 7 30 30 H 1.08995 * 111.12017 * 83.78614 * 10 9 7 31 31 H 0.97000 * 120.00336 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8754 1.2684 7 6 1.3588 -2.1561 1.4716 8 1 0.7198 -2.6570 0.7444 9 6 2.2462 -3.1940 2.1917 10 6 1.4666 -3.4340 3.5133 11 6 0.8777 -2.0235 3.7676 12 1 1.6183 -1.3857 4.2501 13 6 -0.3633 -2.1180 4.6174 14 1 -0.7018 -3.0797 4.9736 15 6 -1.0664 -0.9768 4.9400 16 7 -2.1491 -1.0592 5.6820 17 14 -0.4804 0.6866 4.3244 18 1 -1.1032 0.9744 3.0073 19 1 -0.8698 1.7396 5.2966 20 1 0.9973 0.6685 4.1798 21 8 0.5523 -1.5125 2.4651 22 1 -0.3633 0.0773 1.0247 23 1 -0.3633 0.8488 -0.5794 24 1 -0.3634 -0.9262 -0.4455 25 1 3.1716 -0.8752 -1.2681 26 1 1.6112 -1.8583 -1.2685 27 1 2.3172 -4.1134 1.6106 28 1 3.2359 -2.7843 2.3940 29 1 2.1395 -3.7297 4.3182 30 1 0.6755 -4.1708 3.3744 31 1 -2.6436 -0.2562 5.9093 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705165683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -31.672004 kcal Electronic energy + Delta-G solvation = -12979.844509 eV Core-core repulsion = 10840.714528 eV Total energy + Delta-G solvation = -2139.129980 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99332 -36.60023 -32.49638 -31.17389 -29.22995 -27.86220 -24.83790 -21.94754 -20.91286 -20.31540 -18.93471 -16.79688 -15.87769 -15.40096 -14.72192 -14.06696 -13.54674 -12.72517 -12.61813 -12.41491 -12.25798 -11.92197 -11.69100 -11.13194 -10.84787 -10.71354 -10.65013 -10.47790 -9.86127 -9.81435 -9.59524 -9.41254 -9.17213 -8.58042 -8.17986 -6.07300 -4.15583 3.44007 3.49630 3.60847 4.01163 4.53217 4.85572 4.92313 5.14717 5.24002 5.41345 5.53051 5.61921 5.67998 5.73415 5.93119 6.13180 6.14749 6.18571 6.23367 6.30279 6.44832 6.48570 6.56992 6.68246 6.75400 6.90388 7.27985 7.67009 8.38298 8.47289 8.93973 9.56586 11.03277 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.035994 B = 0.015203 C = 0.011746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.725622 B = 1841.314939 C = 2383.284238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 H 0.095 0.905 4 C -0.179 4.179 5 C -0.158 4.158 6 H 0.098 0.902 7 C 0.110 3.890 8 H 0.064 0.936 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.168 3.832 12 H 0.029 0.971 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.082 3.918 16 N -0.895 5.895 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.301 1.301 20 H -0.266 1.266 21 O -0.375 6.375 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -0.061 -10.116 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 H 0.113 0.887 4 C -0.216 4.216 5 C -0.177 4.177 6 H 0.116 0.884 7 C 0.052 3.948 8 H 0.082 0.918 9 C -0.187 4.187 10 C -0.174 4.174 11 C 0.113 3.887 12 H 0.047 0.953 13 C -0.555 4.555 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.533 5.533 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.228 1.228 20 H -0.190 1.190 21 O -0.296 6.296 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.189 0.182 -10.068 12.979 hybrid contribution 0.458 0.733 -0.294 0.913 sum 8.647 0.914 -10.362 13.527 Atomic orbital electron populations 1.21407 0.92422 1.00627 1.03624 1.22192 0.95952 0.93735 1.03971 0.88664 1.23105 1.02201 1.02310 0.94025 1.22910 1.00803 1.01069 0.92885 0.88415 1.21990 0.90678 0.90460 0.91700 0.91831 1.23126 0.99087 0.98772 0.97737 1.23145 0.98749 1.00245 0.95266 1.21088 0.96392 0.89313 0.81875 0.95308 1.21059 1.09759 0.95647 1.29081 0.90402 1.25055 0.94160 0.99866 0.93101 1.69933 1.17037 1.29604 1.36703 0.86432 0.80066 0.82337 0.78236 1.19699 1.22831 1.19045 1.88605 1.60204 1.64183 1.16607 0.90062 0.93416 0.92910 0.89429 0.89030 0.91547 0.91577 0.91639 0.91100 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.07 37.15 0.34 -1.78 16 2 C -0.14 -2.24 6.39 -90.62 -0.58 -2.82 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.18 -2.44 9.83 -26.73 -0.26 -2.71 16 5 C -0.16 -2.61 5.39 -90.62 -0.49 -3.10 16 6 H 0.10 1.56 7.84 -51.93 -0.41 1.15 16 7 C 0.11 2.07 3.00 -26.01 -0.08 1.99 16 8 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 9 C -0.15 -2.53 6.55 -24.79 -0.16 -2.69 16 10 C -0.14 -2.73 6.53 -24.48 -0.16 -2.89 16 11 C 0.17 4.13 2.67 -26.85 -0.07 4.06 16 12 H 0.03 0.73 7.18 -51.93 -0.37 0.36 16 13 C -0.52 -15.00 9.38 -34.44 -0.32 -15.32 16 14 H 0.08 2.39 8.01 -52.49 -0.42 1.97 16 15 C 0.08 2.44 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 17 Si 0.90 23.42 26.38 -169.99 -4.48 18.93 16 18 H -0.27 -7.00 6.72 56.52 0.38 -6.62 16 19 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 20 H -0.27 -6.76 6.52 56.52 0.37 -6.40 16 21 O -0.38 -8.89 7.01 -35.23 -0.25 -9.13 16 22 H 0.08 1.70 6.43 -51.93 -0.33 1.36 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.86 7.76 -51.92 -0.40 0.46 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.03 7.65 -51.92 -0.40 0.64 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 249.68 15.07 3.76 3.76 Total: -1.00 -30.66 249.68 -6.96 -37.62 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.87 Total: -1.23 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.89 Total: -22.91 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.25 Total: -9.13 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.48 Total: 18.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.66 -6.96 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705165683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.947 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds