Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 115.56597 * 2 1 4 4 C 1.53004 * 117.50351 * 214.30543 * 2 1 3 5 5 C 1.53003 * 60.00023 * 252.51197 * 4 2 1 6 6 H 1.08997 * 117.49505 * 252.48530 * 5 4 2 7 7 C 1.53000 * 117.49814 * 107.49011 * 5 4 2 8 8 H 1.08999 * 109.82307 * 350.81742 * 7 5 4 9 9 C 1.54376 * 109.90941 * 111.75662 * 7 5 4 10 10 C 1.55304 * 102.25567 * 140.90833 * 9 7 5 11 11 C 1.54945 * 100.94045 * 325.86882 * 10 9 7 12 12 H 1.09002 * 110.31005 * 277.52751 * 11 10 9 13 13 C 1.50706 * 110.39154 * 155.40188 * 11 10 9 14 14 H 1.07997 * 119.99579 * 1.44254 * 13 11 10 15 15 C 1.37873 * 119.99810 * 181.44821 * 13 11 10 16 16 N 1.31511 * 119.99887 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00156 * 359.97438 * 15 13 11 18 18 H 1.48505 * 109.46949 * 90.00571 * 17 15 13 19 19 H 1.48508 * 109.47299 * 210.00210 * 17 15 13 20 20 H 1.48496 * 109.47483 * 330.00348 * 17 15 13 21 21 O 1.43240 * 109.82727 * 229.93659 * 7 5 4 22 22 H 1.09000 * 109.47173 * 274.31404 * 1 2 3 23 23 H 1.09001 * 109.46962 * 34.31512 * 1 2 3 24 24 H 1.09007 * 109.47108 * 154.31196 * 1 2 3 25 25 H 1.08996 * 117.49936 * 145.01948 * 4 2 1 26 26 H 1.09004 * 117.49135 * 0.02562 * 4 2 1 27 27 H 1.08998 * 110.84711 * 259.10864 * 9 7 5 28 28 H 1.09010 * 110.84382 * 22.71676 * 9 7 5 29 29 H 1.08997 * 111.12440 * 207.95142 * 10 9 7 30 30 H 1.08995 * 111.12017 * 83.78614 * 10 9 7 31 31 H 0.97000 * 120.00336 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8754 1.2684 7 6 1.3588 -2.1561 1.4716 8 1 0.7198 -2.6570 0.7444 9 6 2.2462 -3.1940 2.1917 10 6 1.4666 -3.4340 3.5133 11 6 0.8777 -2.0235 3.7676 12 1 1.6183 -1.3857 4.2501 13 6 -0.3633 -2.1180 4.6174 14 1 -0.7018 -3.0797 4.9736 15 6 -1.0664 -0.9768 4.9400 16 7 -2.1491 -1.0592 5.6820 17 14 -0.4804 0.6866 4.3244 18 1 -1.1032 0.9744 3.0073 19 1 -0.8698 1.7396 5.2966 20 1 0.9973 0.6685 4.1798 21 8 0.5523 -1.5125 2.4651 22 1 -0.3633 0.0773 1.0247 23 1 -0.3633 0.8488 -0.5794 24 1 -0.3634 -0.9262 -0.4455 25 1 3.1716 -0.8752 -1.2681 26 1 1.6112 -1.8583 -1.2685 27 1 2.3172 -4.1134 1.6106 28 1 3.2359 -2.7843 2.3940 29 1 2.1395 -3.7297 4.3182 30 1 0.6755 -4.1708 3.3744 31 1 -2.6436 -0.2562 5.9093 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705165683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -50.597698 kcal Electronic energy + Delta-G solvation = -12980.665188 eV Core-core repulsion = 10840.714528 eV Total energy + Delta-G solvation = -2139.950660 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50904 -37.99663 -34.71312 -32.78004 -31.00372 -29.24326 -26.68231 -23.40032 -22.17650 -22.07933 -20.32441 -18.95305 -17.35000 -17.03299 -16.48435 -15.56795 -15.20610 -14.73869 -14.29344 -14.02386 -13.83709 -13.18461 -13.14717 -12.71641 -12.46326 -12.32073 -12.26273 -12.09373 -11.72667 -11.44838 -11.41739 -10.88654 -10.84287 -10.46516 -9.99018 -8.36412 -6.48167 1.33479 1.41655 1.51636 2.36203 2.70324 3.01266 3.59032 3.69811 3.87166 3.97275 4.16856 4.23909 4.37014 4.46665 4.55914 4.67107 4.74798 4.92209 4.95750 4.98138 5.00565 5.14341 5.21739 5.25508 5.34855 5.48259 5.52123 5.59929 6.19905 6.51373 6.77383 7.28360 8.78054 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.035994 B = 0.015203 C = 0.011746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.725622 B = 1841.314939 C = 2383.284238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.159 4.159 3 H 0.106 0.894 4 C -0.143 4.143 5 C -0.176 4.176 6 H 0.105 0.895 7 C 0.098 3.902 8 H 0.065 0.935 9 C -0.134 4.134 10 C -0.135 4.135 11 C 0.166 3.834 12 H 0.024 0.976 13 C -0.528 4.528 14 H 0.043 0.957 15 C 0.028 3.972 16 N -0.940 5.940 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.294 1.294 20 H -0.256 1.256 21 O -0.399 6.399 22 H 0.038 0.962 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 0.270 -12.325 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 H 0.125 0.875 4 C -0.180 4.180 5 C -0.194 4.194 6 H 0.123 0.877 7 C 0.041 3.959 8 H 0.083 0.917 9 C -0.171 4.171 10 C -0.173 4.173 11 C 0.110 3.890 12 H 0.042 0.958 13 C -0.565 4.565 14 H 0.061 0.939 15 C -0.171 4.171 16 N -0.580 5.580 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.222 1.222 20 H -0.180 1.180 21 O -0.320 6.320 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.501 0.500 -12.288 16.171 hybrid contribution -0.286 0.543 0.358 0.711 sum 10.215 1.043 -11.930 15.740 Atomic orbital electron populations 1.21338 0.93835 1.01587 1.01139 1.22285 0.95036 0.94890 1.05473 0.87544 1.23179 1.02787 1.00231 0.91819 1.22848 1.00657 1.00997 0.94903 0.87660 1.22279 0.91089 0.91667 0.90906 0.91667 1.23093 0.98878 0.99591 0.95563 1.23073 0.99060 0.97158 0.97962 1.20899 0.94007 0.92065 0.82007 0.95846 1.21389 1.11195 0.94144 1.29811 0.93900 1.25871 0.94293 1.03546 0.93389 1.70050 1.18613 1.30688 1.38653 0.85470 0.80015 0.78183 0.77523 1.19697 1.22170 1.18015 1.88511 1.61906 1.64792 1.16753 0.94306 0.91649 0.92721 0.86556 0.88288 0.88540 0.89665 0.90034 0.92318 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 9.07 71.98 0.65 -3.33 16 2 C -0.16 -4.57 6.39 -10.79 -0.07 -4.64 16 3 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 4 C -0.14 -3.24 9.83 30.60 0.30 -2.94 16 5 C -0.18 -5.18 5.39 -10.79 -0.06 -5.24 16 6 H 0.11 2.95 7.84 -2.39 -0.02 2.93 16 7 C 0.10 3.45 3.00 31.06 0.09 3.55 16 8 H 0.07 2.24 7.79 -2.39 -0.02 2.22 16 9 C -0.13 -4.07 6.55 31.85 0.21 -3.86 16 10 C -0.13 -5.23 6.53 32.05 0.21 -5.02 16 11 C 0.17 8.10 2.67 30.51 0.08 8.18 16 12 H 0.02 1.18 7.18 -2.39 -0.02 1.16 16 13 C -0.53 -31.46 9.38 25.60 0.24 -31.22 16 14 H 0.04 2.76 8.01 -2.91 -0.02 2.74 16 15 C 0.03 1.73 5.47 84.65 0.46 2.20 16 16 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 17 Si 0.96 49.22 26.38 68.60 1.81 51.03 16 18 H -0.27 -13.77 6.72 99.48 0.67 -13.10 16 19 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 20 H -0.26 -12.54 6.52 99.48 0.65 -11.89 16 21 O -0.40 -18.59 7.01 -148.98 -1.04 -19.63 16 22 H 0.04 1.59 6.43 -2.39 -0.02 1.58 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.70 7.76 -2.38 -0.02 1.68 16 25 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.10 2.12 7.97 -2.39 -0.02 2.10 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.29 7.65 -2.38 -0.02 2.28 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.06 2.38 8.05 -2.39 -0.02 2.37 16 31 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -67.86 249.68 4.18 -63.68 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.99 Total: 7.28 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 2.12 Total: -42.32 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.30 Total: -60.05 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.04 Total: -19.63 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 1.81 Total: 51.03 kcal Total: -67.86 4.18 -63.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705165683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds