Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55013 * 2 1 4 4 C 1.52998 * 117.51477 * 214.29632 * 2 1 3 5 5 C 1.53000 * 60.00210 * 252.52166 * 4 2 1 6 6 H 1.09005 * 117.52114 * 252.52301 * 5 4 2 7 7 C 1.53001 * 117.49941 * 107.49078 * 5 4 2 8 8 H 1.09000 * 109.86642 * 237.38686 * 7 5 4 9 9 C 1.54098 * 109.87723 * 116.38134 * 7 5 4 10 10 C 1.54813 * 104.30472 * 238.48010 * 9 7 5 11 11 C 1.55227 * 101.98357 * 339.26359 * 10 9 7 12 12 H 1.09008 * 110.65384 * 278.31365 * 11 10 9 13 13 C 1.50705 * 110.64277 * 155.43734 * 11 10 9 14 14 H 1.08003 * 119.99679 * 4.36986 * 13 11 10 15 15 C 1.37879 * 119.99892 * 184.36673 * 13 11 10 16 16 N 1.31511 * 119.99677 * 180.02562 * 15 13 11 17 17 Si 1.86794 * 120.00122 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.47275 * 90.00196 * 17 15 13 19 19 H 1.48503 * 109.47170 * 209.99995 * 17 15 13 20 20 H 1.48498 * 109.47190 * 329.99997 * 17 15 13 21 21 O 1.43744 * 109.87631 * 358.54998 * 7 5 4 22 22 H 1.08999 * 109.47220 * 274.33076 * 1 2 3 23 23 H 1.09005 * 109.46926 * 34.32799 * 1 2 3 24 24 H 1.08989 * 109.47288 * 154.33077 * 1 2 3 25 25 H 1.09003 * 117.49610 * 145.03664 * 4 2 1 26 26 H 1.08988 * 117.50200 * 0.02562 * 4 2 1 27 27 H 1.09002 * 110.48969 * 357.22346 * 9 7 5 28 28 H 1.09002 * 110.48612 * 119.74013 * 9 7 5 29 29 H 1.08999 * 110.90868 * 97.38351 * 10 9 7 30 30 H 1.09003 * 110.91016 * 220.99202 * 10 9 7 31 31 H 0.97002 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1711 -0.8746 1.2693 7 6 1.3587 -2.1560 1.4718 8 1 0.6523 -1.6537 2.1326 9 6 2.2407 -3.1230 2.2852 10 6 1.9107 -4.5204 1.7064 11 6 0.5315 -4.2749 1.0378 12 1 -0.2680 -4.3210 1.7773 13 6 0.2903 -5.2734 -0.0649 14 1 1.0026 -6.0660 -0.2410 15 6 -0.8396 -5.1753 -0.8489 16 7 -1.0503 -6.0470 -1.8108 17 14 -2.0719 -3.8050 -0.5438 18 1 -1.7054 -2.6191 -1.3589 19 1 -3.4307 -4.2672 -0.9253 20 1 -2.0595 -3.4395 0.8955 21 8 0.6492 -2.9408 0.4986 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8487 -0.5796 24 1 -0.3633 -0.9261 -0.4451 25 1 3.1721 -0.8751 -1.2676 26 1 1.6120 -1.8585 -1.2681 27 1 3.2957 -2.8899 2.1414 28 1 1.9816 -3.0773 3.3430 29 1 2.6532 -4.8205 0.9670 30 1 1.8333 -5.2624 2.5012 31 1 -1.8451 -5.9778 -2.3626 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705165685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -30.983184 kcal Electronic energy + Delta-G solvation = -13076.674242 eV Core-core repulsion = 10937.574131 eV Total energy + Delta-G solvation = -2139.100111 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.01569 -36.37530 -32.50719 -31.17527 -29.22252 -27.84404 -25.02416 -21.88812 -20.59300 -20.14246 -19.05837 -16.86389 -15.69684 -15.13128 -14.71717 -14.21470 -13.68797 -12.86612 -12.74189 -12.56105 -12.14960 -11.82368 -11.35569 -11.09843 -10.81884 -10.70404 -10.54437 -10.39032 -9.89674 -9.64151 -9.47942 -9.33498 -9.25595 -8.60213 -8.36528 -6.09362 -4.17505 3.42332 3.46815 3.56575 4.17468 4.49757 4.80225 5.07643 5.23562 5.32073 5.42436 5.56052 5.64284 5.68326 5.85124 6.12857 6.17047 6.19068 6.24534 6.30312 6.38087 6.46215 6.51402 6.71765 6.72782 6.78204 6.93572 7.20502 7.63545 8.24843 8.46131 8.91531 9.53669 11.01208 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.016208 C = 0.012794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.372258 B = 1727.151506 C = 2188.009426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.157 4.157 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.153 4.153 6 H 0.101 0.899 7 C 0.101 3.899 8 H 0.052 0.948 9 C -0.149 4.149 10 C -0.134 4.134 11 C 0.168 3.832 12 H 0.028 0.972 13 C -0.514 4.514 14 H 0.080 0.920 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.901 3.099 18 H -0.272 1.272 19 H -0.301 1.301 20 H -0.268 1.268 21 O -0.371 6.371 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 9.877 5.934 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.175 4.175 3 H 0.111 0.889 4 C -0.195 4.195 5 C -0.171 4.171 6 H 0.119 0.881 7 C 0.043 3.957 8 H 0.070 0.930 9 C -0.186 4.186 10 C -0.172 4.172 11 C 0.113 3.887 12 H 0.045 0.955 13 C -0.551 4.551 14 H 0.098 0.902 15 C -0.122 4.122 16 N -0.532 5.532 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.228 1.228 20 H -0.193 1.193 21 O -0.292 6.292 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.300 9.888 5.598 12.149 hybrid contribution -0.448 0.665 0.297 0.855 sum 3.852 10.553 5.894 12.687 Atomic orbital electron populations 1.21378 0.93076 1.02530 1.01184 1.22272 0.95535 0.93503 1.06159 0.88887 1.23036 1.01835 1.01004 0.93667 1.22611 0.99942 0.99243 0.95281 0.88112 1.21904 0.92035 0.91562 0.90243 0.92988 1.22941 0.99910 0.96815 0.98972 1.23028 0.99995 0.94725 0.99446 1.21268 0.92008 0.80769 0.94693 0.95458 1.20933 1.07587 1.10422 1.16162 0.90239 1.25051 0.97863 0.95253 0.94050 1.69926 1.27888 1.35777 1.19561 0.86430 0.78717 0.82318 0.79500 1.19754 1.22826 1.19286 1.89022 1.75236 1.23507 1.41432 0.92981 0.93211 0.90835 0.89964 0.86775 0.91654 0.92105 0.91184 0.92014 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.11 37.16 0.34 -1.74 16 2 C -0.16 -2.47 6.41 -90.62 -0.58 -3.05 16 3 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.16 -2.75 9.52 -26.73 -0.25 -3.00 16 5 C -0.15 -2.52 5.62 -90.62 -0.51 -3.03 16 6 H 0.10 1.44 7.85 -51.93 -0.41 1.03 16 7 C 0.10 1.90 3.01 -26.16 -0.08 1.82 16 8 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 9 C -0.15 -2.53 6.63 -25.20 -0.17 -2.70 16 10 C -0.13 -2.71 6.58 -24.60 -0.16 -2.87 16 11 C 0.17 4.08 2.54 -26.70 -0.07 4.01 16 12 H 0.03 0.68 7.34 -51.92 -0.38 0.30 16 13 C -0.51 -14.75 9.42 -34.44 -0.32 -15.07 16 14 H 0.08 2.43 8.02 -52.48 -0.42 2.01 16 15 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 16 N -0.89 -27.60 13.96 55.43 0.77 -26.82 16 17 Si 0.90 23.19 26.33 -169.99 -4.48 18.71 16 18 H -0.27 -6.94 6.90 56.52 0.39 -6.55 16 19 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 20 H -0.27 -6.71 6.59 56.52 0.37 -6.34 16 21 O -0.37 -8.65 6.01 -35.23 -0.21 -8.86 16 22 H 0.05 0.82 7.81 -51.93 -0.41 0.42 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.48 6.69 -51.94 -0.35 1.13 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.11 2.38 6.94 -51.94 -0.36 2.02 16 27 H 0.06 1.00 7.51 -51.93 -0.39 0.61 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.46 8.05 -51.93 -0.42 1.05 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 248.15 15.07 3.74 3.74 Total: -1.00 -30.15 248.15 -6.90 -37.05 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.82 Total: -0.52 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.90 Total: -23.30 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.82 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.21 Total: -8.86 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.48 Total: 18.71 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.15 -6.90 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705165685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.069 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds