Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55013 * 2 1 4 4 C 1.52998 * 117.51477 * 214.29632 * 2 1 3 5 5 C 1.53000 * 60.00210 * 252.52166 * 4 2 1 6 6 H 1.09005 * 117.52114 * 252.52301 * 5 4 2 7 7 C 1.53001 * 117.49941 * 107.49078 * 5 4 2 8 8 H 1.09000 * 109.86642 * 237.38686 * 7 5 4 9 9 C 1.54098 * 109.87723 * 116.38134 * 7 5 4 10 10 C 1.54813 * 104.30472 * 238.48010 * 9 7 5 11 11 C 1.55227 * 101.98357 * 339.26359 * 10 9 7 12 12 H 1.09008 * 110.65384 * 278.31365 * 11 10 9 13 13 C 1.50705 * 110.64277 * 155.43734 * 11 10 9 14 14 H 1.08003 * 119.99679 * 4.36986 * 13 11 10 15 15 C 1.37879 * 119.99892 * 184.36673 * 13 11 10 16 16 N 1.31511 * 119.99677 * 180.02562 * 15 13 11 17 17 Si 1.86794 * 120.00122 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.47275 * 90.00196 * 17 15 13 19 19 H 1.48503 * 109.47170 * 209.99995 * 17 15 13 20 20 H 1.48498 * 109.47190 * 329.99997 * 17 15 13 21 21 O 1.43744 * 109.87631 * 358.54998 * 7 5 4 22 22 H 1.08999 * 109.47220 * 274.33076 * 1 2 3 23 23 H 1.09005 * 109.46926 * 34.32799 * 1 2 3 24 24 H 1.08989 * 109.47288 * 154.33077 * 1 2 3 25 25 H 1.09003 * 117.49610 * 145.03664 * 4 2 1 26 26 H 1.08988 * 117.50200 * 0.02562 * 4 2 1 27 27 H 1.09002 * 110.48969 * 357.22346 * 9 7 5 28 28 H 1.09002 * 110.48612 * 119.74013 * 9 7 5 29 29 H 1.08999 * 110.90868 * 97.38351 * 10 9 7 30 30 H 1.09003 * 110.91016 * 220.99202 * 10 9 7 31 31 H 0.97002 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1711 -0.8746 1.2693 7 6 1.3587 -2.1560 1.4718 8 1 0.6523 -1.6537 2.1326 9 6 2.2407 -3.1230 2.2852 10 6 1.9107 -4.5204 1.7064 11 6 0.5315 -4.2749 1.0378 12 1 -0.2680 -4.3210 1.7773 13 6 0.2903 -5.2734 -0.0649 14 1 1.0026 -6.0660 -0.2410 15 6 -0.8396 -5.1753 -0.8489 16 7 -1.0503 -6.0470 -1.8108 17 14 -2.0719 -3.8050 -0.5438 18 1 -1.7054 -2.6191 -1.3589 19 1 -3.4307 -4.2672 -0.9253 20 1 -2.0595 -3.4395 0.8955 21 8 0.6492 -2.9408 0.4986 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8487 -0.5796 24 1 -0.3633 -0.9261 -0.4451 25 1 3.1721 -0.8751 -1.2676 26 1 1.6120 -1.8585 -1.2681 27 1 3.2957 -2.8899 2.1414 28 1 1.9816 -3.0773 3.3430 29 1 2.6532 -4.8205 0.9670 30 1 1.8333 -5.2624 2.5012 31 1 -1.8451 -5.9778 -2.3626 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705165685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -49.429215 kcal Electronic energy + Delta-G solvation = -13077.474122 eV Core-core repulsion = 10937.574131 eV Total energy + Delta-G solvation = -2139.899991 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55546 -37.83011 -34.71435 -32.77487 -30.98953 -29.23335 -26.87583 -23.49014 -22.00542 -21.83886 -20.41269 -19.03404 -17.28368 -16.64838 -16.38140 -15.94257 -15.36578 -14.77706 -14.34910 -14.06562 -13.89906 -13.24373 -12.95465 -12.75235 -12.47913 -12.21479 -12.11553 -12.09007 -11.70584 -11.46657 -11.28758 -10.86929 -10.78667 -10.52908 -10.13167 -8.37419 -6.49059 1.32202 1.39919 1.48996 2.34457 2.82828 2.93530 3.50997 3.76365 3.95001 4.04425 4.09728 4.26156 4.36167 4.51292 4.59813 4.66988 4.83186 4.94053 4.96171 4.99514 5.07216 5.11568 5.19483 5.29178 5.40766 5.45503 5.51729 5.60447 6.19860 6.44982 6.69606 7.26083 8.77087 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.016208 C = 0.012794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.372258 B = 1727.151506 C = 2188.009426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.143 4.143 3 H 0.128 0.872 4 C -0.177 4.177 5 C -0.150 4.150 6 H 0.135 0.865 7 C 0.086 3.914 8 H 0.061 0.939 9 C -0.135 4.135 10 C -0.132 4.132 11 C 0.164 3.836 12 H 0.025 0.975 13 C -0.523 4.523 14 H 0.043 0.957 15 C 0.028 3.972 16 N -0.940 5.940 17 Si 0.963 3.037 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.255 1.255 21 O -0.392 6.392 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 12.485 7.817 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 H 0.146 0.854 4 C -0.214 4.214 5 C -0.168 4.168 6 H 0.152 0.848 7 C 0.028 3.972 8 H 0.079 0.921 9 C -0.173 4.173 10 C -0.170 4.170 11 C 0.108 3.892 12 H 0.043 0.957 13 C -0.560 4.560 14 H 0.061 0.939 15 C -0.171 4.171 16 N -0.579 5.579 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.222 1.222 20 H -0.180 1.180 21 O -0.313 6.313 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.109 12.499 7.497 15.444 hybrid contribution -0.640 -0.170 -0.300 0.727 sum 4.469 12.329 7.197 14.959 Atomic orbital electron populations 1.21385 0.94112 1.01234 1.01702 1.22407 0.94811 0.94531 1.04299 0.85436 1.22928 1.02568 1.01423 0.94508 1.22732 1.00890 0.98781 0.94351 0.84763 1.22260 0.92727 0.92091 0.90075 0.92085 1.22918 1.00973 0.93439 0.99956 1.22948 0.97036 0.97615 0.99392 1.21093 0.94393 0.80720 0.92994 0.95703 1.21229 1.06656 1.10947 1.17188 0.93867 1.25866 0.99903 0.97450 0.93887 1.70045 1.28922 1.37904 1.21065 0.85463 0.76463 0.79228 0.79922 1.19905 1.22208 1.17963 1.88956 1.76279 1.23000 1.43021 0.92082 0.91174 0.94903 0.87757 0.91349 0.89283 0.89308 0.92809 0.90412 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.11 71.98 0.66 -3.29 16 2 C -0.14 -3.99 6.41 -10.79 -0.07 -4.06 16 3 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 4 C -0.18 -5.83 9.52 30.59 0.29 -5.54 16 5 C -0.15 -4.39 5.62 -10.79 -0.06 -4.45 16 6 H 0.13 3.08 7.85 -2.38 -0.02 3.06 16 7 C 0.09 2.99 3.01 30.97 0.09 3.08 16 8 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 9 C -0.14 -4.10 6.63 31.58 0.21 -3.89 16 10 C -0.13 -5.15 6.58 31.98 0.21 -4.94 16 11 C 0.16 7.94 2.54 30.61 0.08 8.02 16 12 H 0.03 1.23 7.34 -2.38 -0.02 1.21 16 13 C -0.52 -31.04 9.42 25.60 0.24 -30.80 16 14 H 0.04 2.79 8.02 -2.91 -0.02 2.77 16 15 C 0.03 1.72 5.47 84.66 0.46 2.19 16 16 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 17 Si 0.96 48.91 26.33 68.60 1.81 50.71 16 18 H -0.27 -13.83 6.90 99.48 0.69 -13.14 16 19 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.26 -12.29 6.59 99.48 0.66 -11.64 16 21 O -0.39 -17.99 6.01 -148.98 -0.89 -18.89 16 22 H 0.06 1.75 7.81 -2.39 -0.02 1.73 16 23 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.03 1.28 6.69 -2.39 -0.02 1.26 16 25 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.07 2.91 6.94 -2.39 -0.02 2.89 16 27 H 0.09 2.30 7.51 -2.39 -0.02 2.28 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.24 8.05 -2.39 -0.02 2.22 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -67.59 248.15 4.34 -63.25 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.01 Total: 8.47 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 2.11 Total: -43.68 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.89 Total: -18.89 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.81 Total: 50.71 kcal Total: -67.59 4.34 -63.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705165685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.821 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds