Wall clock time and date at job start Mon Mar 30 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48505 * 109.47037 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47213 * 120.00003 * 3 2 1 7 7 C 1.37878 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00189 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.44028 * 59.91300 * 9 7 2 11 11 C 1.53072 * 109.43931 * 179.79705 * 9 7 2 12 12 C 1.53348 * 109.09043 * 179.47928 * 11 9 7 13 13 C 1.52848 * 108.74320 * 305.13130 * 12 11 9 14 14 C 1.53358 * 113.55561 * 282.24325 * 13 12 11 15 15 C 1.53857 * 86.94634 * 220.09264 * 14 13 12 16 16 C 1.53501 * 113.63677 * 184.18958 * 13 12 11 17 17 C 1.52752 * 112.67422 * 53.21455 * 13 12 11 18 18 O 1.42880 * 109.43489 * 299.99876 * 9 7 2 19 19 H 0.97005 * 120.00355 * 0.02562 * 1 2 3 20 20 H 1.09009 * 109.53231 * 299.35588 * 11 9 7 21 21 H 1.08997 * 109.53903 * 59.51071 * 11 9 7 22 22 H 1.08996 * 109.59186 * 185.35709 * 12 11 9 23 23 H 1.08995 * 109.59312 * 64.90419 * 12 11 9 24 24 H 1.08991 * 113.63429 * 105.57594 * 14 13 12 25 25 H 1.09001 * 113.71140 * 334.61819 * 14 13 12 26 26 H 1.09002 * 113.60162 * 139.67901 * 15 14 13 27 27 H 1.09003 * 113.60166 * 270.45520 * 15 14 13 28 28 H 1.09003 * 113.63437 * 25.34953 * 16 13 12 29 29 H 1.08995 * 113.69040 * 254.32794 * 16 13 12 30 30 H 1.08996 * 109.52583 * 66.27129 * 17 13 12 31 31 H 1.09010 * 109.52344 * 186.47422 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6238 -2.5559 -0.8890 11 6 2.2465 -3.6620 -0.0039 12 6 1.4718 -4.9854 0.0093 13 6 0.5163 -4.9832 1.2022 14 6 1.2061 -5.2748 2.5405 15 6 -0.0243 -6.1278 2.8950 16 6 -0.2461 -6.3033 1.3825 17 6 -0.3835 -3.7493 1.2337 18 8 0.4295 -2.5738 1.1671 19 1 -0.4851 0.8401 -0.0004 20 1 2.8637 -3.6100 -0.9009 21 1 2.8819 -3.6014 0.8796 22 1 2.1704 -5.8169 0.1021 23 1 0.9024 -5.0848 -0.9148 24 1 1.3242 -4.3944 3.1721 25 1 2.1252 -5.8526 2.4432 26 1 0.2220 -7.0560 3.4106 27 1 -0.8167 -5.5664 3.3900 28 1 0.2699 -7.1668 0.9626 29 1 -1.2932 -6.2484 1.0851 30 1 -1.0624 -3.7716 0.3813 31 1 -0.9594 -3.7419 2.1593 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713152844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:46 Heat of formation + Delta-G solvation = -41.616688 kcal Electronic energy + Delta-G solvation = -13015.002201 eV Core-core repulsion = 10875.440987 eV Total energy + Delta-G solvation = -2139.561214 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65657 -36.04007 -32.49651 -31.71813 -28.45259 -25.57692 -25.10825 -23.67044 -21.94042 -19.92813 -17.70180 -16.54283 -15.23225 -14.96823 -14.56005 -14.31464 -13.40553 -13.16053 -12.89678 -12.12428 -12.04021 -11.85331 -11.54861 -10.93690 -10.86760 -10.78358 -10.48057 -10.34235 -9.86973 -9.72359 -9.65536 -9.21799 -8.82011 -8.44413 -7.81830 -5.97254 -4.09269 3.34857 3.39037 3.41744 4.44912 4.92172 5.01540 5.06725 5.16358 5.29111 5.75046 5.77379 5.89091 5.98409 6.03443 6.05904 6.12575 6.24387 6.38340 6.40586 6.52147 6.62376 6.76230 6.79362 6.92851 7.01565 7.02149 7.56797 7.94023 8.34102 8.82954 9.18598 9.60931 11.10751 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.067640 B = 0.010019 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.857389 B = 2794.048356 C = 2914.557785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.218 3.782 10 H 0.012 0.988 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.141 4.141 16 C -0.134 4.134 17 C 0.083 3.917 18 O -0.355 6.355 19 H 0.261 0.739 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -9.722 2.369 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.163 3.837 10 H 0.029 0.971 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.110 4.110 14 C -0.162 4.162 15 C -0.179 4.179 16 C -0.172 4.172 17 C 0.005 3.995 18 O -0.273 6.273 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.011 -9.458 2.504 9.784 hybrid contribution 0.419 0.583 -0.181 0.741 sum 0.408 -8.875 2.323 9.183 Atomic orbital electron populations 1.70029 1.06054 1.26554 1.47262 1.25076 0.94781 0.99247 0.93773 0.86679 0.79700 0.82995 0.78689 1.20140 1.21195 1.20073 1.20987 0.92651 0.89836 1.52983 0.91941 1.19651 0.87213 0.91956 0.84910 0.97079 1.22231 0.99530 0.95176 1.00877 1.21540 0.97362 0.98257 0.96919 1.22297 0.97346 0.95800 0.95604 1.22792 0.96451 0.99621 0.97331 1.22843 0.99092 0.99671 0.96280 1.22920 1.00174 0.97683 0.96376 1.22009 0.92315 0.85494 0.99708 1.88372 1.56352 1.37014 1.45568 0.92965 0.92662 0.92555 0.93214 0.92734 0.91022 0.90963 0.92284 0.90413 0.90709 0.91878 0.94855 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.99 12.84 55.43 0.71 -25.27 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.18 8.79 -34.44 -0.30 -15.48 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.22 5.80 2.44 -27.85 -0.07 5.73 16 10 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 11 C -0.14 -3.06 5.30 -26.51 -0.14 -3.20 16 12 C -0.10 -1.90 5.21 -26.63 -0.14 -2.03 16 13 C -0.11 -1.96 0.86 -154.27 -0.13 -2.09 16 14 C -0.12 -2.03 7.12 -26.10 -0.19 -2.22 16 15 C -0.14 -1.96 7.73 -25.83 -0.20 -2.15 16 16 C -0.13 -1.93 7.25 -26.02 -0.19 -2.12 16 17 C 0.08 1.76 5.92 37.03 0.22 1.98 16 18 O -0.35 -9.47 9.80 -35.23 -0.35 -9.81 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 21 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 22 H 0.05 0.80 8.04 -51.93 -0.42 0.39 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 25 H 0.07 1.09 8.02 -51.93 -0.42 0.68 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.06 7.64 -51.93 -0.40 0.66 16 28 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.36 7.34 -51.92 -0.38 0.97 16 LS Contribution 249.72 15.07 3.76 3.76 Total: -1.00 -30.29 249.72 -7.07 -37.37 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.95 Total: -3.24 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.23 Total: -19.47 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.71 Total: -25.27 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.35 Total: -9.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.29 -7.07 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713152844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.249 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds