Wall clock time and date at job start Mon Mar 30 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48505 * 109.47037 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47213 * 120.00003 * 3 2 1 7 7 C 1.37878 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00189 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.44028 * 59.91300 * 9 7 2 11 11 C 1.53072 * 109.43931 * 179.79705 * 9 7 2 12 12 C 1.53348 * 109.09043 * 179.47928 * 11 9 7 13 13 C 1.52848 * 108.74320 * 305.13130 * 12 11 9 14 14 C 1.53358 * 113.55561 * 282.24325 * 13 12 11 15 15 C 1.53857 * 86.94634 * 220.09264 * 14 13 12 16 16 C 1.53501 * 113.63677 * 184.18958 * 13 12 11 17 17 C 1.52752 * 112.67422 * 53.21455 * 13 12 11 18 18 O 1.42880 * 109.43489 * 299.99876 * 9 7 2 19 19 H 0.97005 * 120.00355 * 0.02562 * 1 2 3 20 20 H 1.09009 * 109.53231 * 299.35588 * 11 9 7 21 21 H 1.08997 * 109.53903 * 59.51071 * 11 9 7 22 22 H 1.08996 * 109.59186 * 185.35709 * 12 11 9 23 23 H 1.08995 * 109.59312 * 64.90419 * 12 11 9 24 24 H 1.08991 * 113.63429 * 105.57594 * 14 13 12 25 25 H 1.09001 * 113.71140 * 334.61819 * 14 13 12 26 26 H 1.09002 * 113.60162 * 139.67901 * 15 14 13 27 27 H 1.09003 * 113.60166 * 270.45520 * 15 14 13 28 28 H 1.09003 * 113.63437 * 25.34953 * 16 13 12 29 29 H 1.08995 * 113.69040 * 254.32794 * 16 13 12 30 30 H 1.08996 * 109.52583 * 66.27129 * 17 13 12 31 31 H 1.09010 * 109.52344 * 186.47422 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6238 -2.5559 -0.8890 11 6 2.2465 -3.6620 -0.0039 12 6 1.4718 -4.9854 0.0093 13 6 0.5163 -4.9832 1.2022 14 6 1.2061 -5.2748 2.5405 15 6 -0.0243 -6.1278 2.8950 16 6 -0.2461 -6.3033 1.3825 17 6 -0.3835 -3.7493 1.2337 18 8 0.4295 -2.5738 1.1671 19 1 -0.4851 0.8401 -0.0004 20 1 2.8637 -3.6100 -0.9009 21 1 2.8819 -3.6014 0.8796 22 1 2.1704 -5.8169 0.1021 23 1 0.9024 -5.0848 -0.9148 24 1 1.3242 -4.3944 3.1721 25 1 2.1252 -5.8526 2.4432 26 1 0.2220 -7.0560 3.4106 27 1 -0.8167 -5.5664 3.3900 28 1 0.2699 -7.1668 0.9626 29 1 -1.2932 -6.2484 1.0851 30 1 -1.0624 -3.7716 0.3813 31 1 -0.9594 -3.7419 2.1593 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713152844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:46 Heat of formation + Delta-G solvation = -60.102614 kcal Electronic energy + Delta-G solvation = -13015.803811 eV Core-core repulsion = 10875.440987 eV Total energy + Delta-G solvation = -2140.362824 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12073 -37.78737 -34.63599 -33.46584 -30.21397 -27.35692 -26.45705 -25.37980 -23.62000 -21.53788 -19.18288 -18.68874 -16.89065 -16.61837 -16.26186 -16.06411 -15.18235 -14.75892 -14.48264 -13.88569 -13.67248 -13.26187 -13.10888 -12.80160 -12.63579 -12.37277 -12.07055 -11.99601 -11.66275 -11.32247 -11.17564 -10.78836 -10.67941 -10.51621 -9.73024 -8.16063 -6.37005 1.39763 1.43486 1.51038 2.40102 3.02937 3.56882 3.73620 3.80234 3.94997 4.08506 4.27419 4.39869 4.49360 4.65896 4.74922 4.82646 4.85667 4.93000 5.01182 5.04100 5.11963 5.17644 5.23070 5.30928 5.53298 5.57286 5.62561 5.77703 6.20858 6.66174 7.18764 7.39557 8.92277 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.067640 B = 0.010019 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.857389 B = 2794.048356 C = 2914.557785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.065 0.935 9 C 0.216 3.784 10 H -0.025 1.025 11 C -0.132 4.132 12 C -0.098 4.098 13 C -0.122 4.122 14 C -0.126 4.126 15 C -0.130 4.130 16 C -0.120 4.120 17 C 0.077 3.923 18 O -0.390 6.390 19 H 0.262 0.738 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -11.152 2.858 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.083 0.917 9 C 0.160 3.840 10 H -0.007 1.007 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.122 4.122 14 C -0.164 4.164 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.001 4.001 18 O -0.309 6.309 19 H 0.071 0.929 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.792 -10.906 2.991 11.337 hybrid contribution 0.129 1.013 -0.334 1.074 sum 0.921 -9.894 2.658 10.286 Atomic orbital electron populations 1.70172 1.07765 1.27522 1.48351 1.26002 0.95698 1.03222 0.93163 0.85540 0.78395 0.78058 0.79176 1.18780 1.20607 1.19481 1.21461 0.93127 0.91482 1.53162 0.91716 1.19526 0.87525 0.93355 0.83555 1.00744 1.22062 0.98622 0.95497 1.00799 1.21533 0.97687 0.97063 0.97261 1.22264 0.97632 0.95946 0.96390 1.22833 0.98321 0.99440 0.95784 1.22798 0.97452 1.00226 0.96224 1.22892 1.00185 0.95897 0.96723 1.22194 0.92473 0.85732 0.99658 1.88244 1.57330 1.40157 1.45201 0.92913 0.92213 0.92995 0.89885 0.92865 0.93614 0.89193 0.89477 0.90667 0.88347 0.91399 0.96135 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.88 12.84 21.45 0.28 -55.60 16 2 C 0.02 1.25 5.40 84.66 0.46 1.71 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.56 -32.75 8.79 25.60 0.23 -32.53 16 8 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.22 11.86 2.44 29.87 0.07 11.93 16 10 H -0.03 -1.50 8.14 -2.39 -0.02 -1.52 16 11 C -0.13 -5.75 5.30 30.74 0.16 -5.59 16 12 C -0.10 -3.43 5.21 30.66 0.16 -3.27 16 13 C -0.12 -4.15 0.86 -52.03 -0.04 -4.19 16 14 C -0.13 -3.84 7.12 31.00 0.22 -3.62 16 15 C -0.13 -3.14 7.73 31.18 0.24 -2.90 16 16 C -0.12 -3.03 7.25 31.06 0.23 -2.81 16 17 C 0.08 3.31 5.92 71.90 0.43 3.73 16 18 O -0.39 -21.53 9.80 -148.98 -1.46 -22.99 16 19 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 20 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 21 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 22 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 25 H 0.09 2.41 8.02 -2.39 -0.02 2.39 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.86 7.64 -2.39 -0.02 1.84 16 28 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 29 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 3.17 7.34 -2.38 -0.02 3.15 16 Total: -1.00 -66.88 249.72 4.07 -62.81 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.08 Total: 6.23 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.15 Total: -37.52 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.28 Total: -55.60 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.46 Total: -22.99 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.88 4.07 -62.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713152844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.710 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds