Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47351 * 2 1 4 4 C 1.53006 * 109.46983 * 239.99714 * 2 1 3 5 5 C 1.50698 * 109.46526 * 65.00147 * 4 2 1 6 6 H 1.08000 * 120.00867 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99980 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47317 * 89.99597 * 9 7 5 11 11 H 1.48504 * 109.47062 * 210.00053 * 9 7 5 12 12 H 1.48508 * 109.47039 * 329.99579 * 9 7 5 13 13 N 1.46502 * 109.47538 * 120.00125 * 2 1 3 14 14 N 1.40301 * 126.84013 * 59.99660 * 13 2 1 15 15 N 1.28732 * 108.19558 * 180.02562 * 14 13 2 16 16 C 1.33297 * 109.98163 * 359.97438 * 15 14 13 17 17 C 1.35865 * 108.85559 * 359.97438 * 16 15 14 18 18 N 1.39290 * 126.67530 * 179.73582 * 17 16 15 19 19 H 1.09000 * 109.47166 * 299.99408 * 1 2 3 20 20 H 1.08998 * 109.47497 * 59.99698 * 1 2 3 21 21 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47051 * 184.99628 * 4 2 1 23 23 H 1.08993 * 109.47635 * 305.00409 * 4 2 1 24 24 H 0.96999 * 120.00255 * 179.97438 * 8 7 5 25 25 H 1.07995 * 125.57309 * 179.97438 * 16 15 14 26 26 H 0.97001 * 119.99444 * 0.02791 * 18 17 16 27 27 H 0.96995 * 119.99934 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4765 6 1 1.0798 0.9741 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 1.6447 0.2772 -4.7994 9 14 2.9633 -1.9884 -3.9029 10 1 2.0242 -3.1326 -4.0200 11 1 3.8123 -1.9181 -5.1192 12 1 3.8251 -2.1756 -2.7079 13 7 2.0184 -0.6906 1.1961 14 7 1.7695 -2.0229 1.5589 15 7 2.3697 -2.2548 2.6738 16 6 3.0085 -1.1590 3.0838 17 6 2.8055 -0.1674 2.1774 18 7 3.2997 1.1332 2.2425 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.1262 -0.7995 -1.2056 23 1 1.6053 -1.7198 -1.2952 24 1 1.8926 -0.0453 -5.6800 25 1 3.5920 -1.0734 3.9885 26 1 3.8506 1.4056 2.9930 27 1 3.0930 1.7664 1.5374 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713460243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = 86.823128 kcal Electronic energy + Delta-G solvation = -12299.692727 eV Core-core repulsion = 10094.453489 eV Total energy + Delta-G solvation = -2205.239238 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.41843 -35.96551 -34.66250 -32.60512 -30.40515 -28.50956 -27.69789 -24.18468 -22.22972 -21.23728 -19.63220 -17.53530 -16.48672 -16.44359 -15.28547 -15.20413 -14.41081 -13.77275 -13.48627 -12.84654 -12.19143 -11.66038 -11.43428 -11.31456 -11.26907 -11.05647 -10.66551 -10.47193 -10.18197 -9.94699 -9.41553 -9.02767 -8.67603 -7.70934 -6.19478 -4.20664 2.06070 2.60742 3.10306 3.26224 3.33501 3.39675 3.83716 4.34993 4.99745 5.15432 5.23868 5.45540 5.60909 5.79217 5.92681 6.26817 6.36861 6.49502 6.65650 6.81582 7.01163 7.14040 7.41921 7.59084 7.64410 8.30241 8.79704 8.82360 9.41562 10.92457 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045195 B = 0.010542 C = 0.009883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.387088 B = 2655.376104 C = 2832.594348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.163 3.837 3 H 0.090 0.910 4 C -0.014 4.014 5 C -0.526 4.526 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.379 5.379 14 N -0.087 5.087 15 N -0.233 5.233 16 C -0.159 4.159 17 C 0.326 3.674 18 N -0.848 5.848 19 H 0.040 0.960 20 H 0.091 0.909 21 H 0.065 0.935 22 H 0.020 0.980 23 H 0.031 0.969 24 H 0.266 0.734 25 H 0.173 0.827 26 H 0.415 0.585 27 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 2.686 11.992 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 H 0.108 0.892 4 C -0.052 4.052 5 C -0.564 4.564 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.173 5.173 14 N -0.066 5.066 15 N -0.101 5.101 16 C -0.323 4.323 17 C 0.090 3.910 18 N -0.400 5.400 19 H 0.060 0.940 20 H 0.109 0.891 21 H 0.084 0.916 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.190 0.810 26 H 0.246 0.754 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.936 1.290 11.339 11.575 hybrid contribution 1.228 0.711 -0.081 1.421 sum 3.164 2.001 11.258 11.864 Atomic orbital electron populations 1.22021 0.93112 1.03348 1.01968 1.21646 0.95796 0.94899 0.81411 0.89165 1.19895 0.96644 0.97137 0.91561 1.20869 1.36934 1.09978 0.88648 0.90412 1.24913 0.95191 0.96919 0.95714 1.69881 1.46165 1.39145 0.98163 0.86818 0.80790 0.84204 0.77820 1.19856 1.21185 1.19113 1.51139 1.37044 1.10840 1.18314 1.81980 1.23301 0.91654 1.09626 1.74038 1.06507 1.23988 1.05592 1.22213 1.15395 0.89694 1.04969 1.18829 0.93301 0.87998 0.90838 1.41431 1.60399 1.07969 1.30170 0.94043 0.89075 0.91562 0.96189 0.95107 0.92416 0.81026 0.75363 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.28 37.15 0.34 -2.29 15 2 C 0.16 3.12 3.16 -67.93 -0.21 2.90 15 3 H 0.09 1.55 6.99 -51.93 -0.36 1.19 15 4 C -0.01 -0.33 3.80 -27.88 -0.11 -0.44 15 5 C -0.53 -14.00 8.96 -34.44 -0.31 -14.31 15 6 H 0.08 2.14 7.30 -52.49 -0.38 1.76 15 7 C 0.08 2.11 5.47 -17.82 -0.10 2.02 15 8 N -0.90 -26.45 13.96 55.43 0.77 -25.68 15 9 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 15 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 12 H -0.27 -6.55 6.54 56.52 0.37 -6.18 15 13 N -0.38 -7.11 3.33 -53.77 -0.18 -7.29 15 14 N -0.09 -1.80 13.70 60.35 0.83 -0.98 15 15 N -0.23 -4.49 12.32 30.25 0.37 -4.11 15 16 C -0.16 -2.51 11.90 -17.77 -0.21 -2.72 15 17 C 0.33 5.07 8.09 -152.54 -1.23 3.84 15 18 N -0.85 -9.10 9.11 31.25 0.28 -8.82 15 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.09 1.69 6.95 -51.93 -0.36 1.33 15 21 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.02 0.49 7.20 -51.93 -0.37 0.11 15 23 H 0.03 0.76 7.57 -51.93 -0.39 0.37 15 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 25 H 0.17 2.03 8.06 -52.49 -0.42 1.61 15 26 H 0.42 3.03 8.96 -40.82 -0.37 2.66 15 27 H 0.40 4.07 7.83 -40.82 -0.32 3.75 15 LS Contribution 236.75 15.07 3.57 3.57 Total: -1.00 -31.61 236.75 -3.84 -35.45 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.99 Total: 1.86 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.83 Total: -11.00 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 2.08 Total: -46.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.61 -3.84 -35.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713460243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.277 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds