Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47351 * 2 1 4 4 C 1.53006 * 109.46983 * 239.99714 * 2 1 3 5 5 C 1.50698 * 109.46526 * 65.00147 * 4 2 1 6 6 H 1.08000 * 120.00867 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99980 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47317 * 89.99597 * 9 7 5 11 11 H 1.48504 * 109.47062 * 210.00053 * 9 7 5 12 12 H 1.48508 * 109.47039 * 329.99579 * 9 7 5 13 13 N 1.46502 * 109.47538 * 120.00125 * 2 1 3 14 14 N 1.40301 * 126.84013 * 59.99660 * 13 2 1 15 15 N 1.28732 * 108.19558 * 180.02562 * 14 13 2 16 16 C 1.33297 * 109.98163 * 359.97438 * 15 14 13 17 17 C 1.35865 * 108.85559 * 359.97438 * 16 15 14 18 18 N 1.39290 * 126.67530 * 179.73582 * 17 16 15 19 19 H 1.09000 * 109.47166 * 299.99408 * 1 2 3 20 20 H 1.08998 * 109.47497 * 59.99698 * 1 2 3 21 21 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47051 * 184.99628 * 4 2 1 23 23 H 1.08993 * 109.47635 * 305.00409 * 4 2 1 24 24 H 0.96999 * 120.00255 * 179.97438 * 8 7 5 25 25 H 1.07995 * 125.57309 * 179.97438 * 16 15 14 26 26 H 0.97001 * 119.99444 * 0.02791 * 18 17 16 27 27 H 0.96995 * 119.99934 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4765 6 1 1.0798 0.9741 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 1.6447 0.2772 -4.7994 9 14 2.9633 -1.9884 -3.9029 10 1 2.0242 -3.1326 -4.0200 11 1 3.8123 -1.9181 -5.1192 12 1 3.8251 -2.1756 -2.7079 13 7 2.0184 -0.6906 1.1961 14 7 1.7695 -2.0229 1.5589 15 7 2.3697 -2.2548 2.6738 16 6 3.0085 -1.1590 3.0838 17 6 2.8055 -0.1674 2.1774 18 7 3.2997 1.1332 2.2425 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.1262 -0.7995 -1.2056 23 1 1.6053 -1.7198 -1.2952 24 1 1.8926 -0.0453 -5.6800 25 1 3.5920 -1.0734 3.9885 26 1 3.8506 1.4056 2.9930 27 1 3.0930 1.7664 1.5374 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713460243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = 63.682820 kcal Electronic energy + Delta-G solvation = -12300.696166 eV Core-core repulsion = 10094.453489 eV Total energy + Delta-G solvation = -2206.242677 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.73621 -37.52990 -35.85099 -34.57882 -31.97820 -29.73779 -29.45921 -25.83295 -23.90275 -22.51885 -21.13447 -19.31109 -18.05948 -17.46105 -16.77622 -16.51957 -16.23640 -15.35937 -15.03953 -14.65008 -13.98304 -13.26057 -13.09268 -12.97626 -12.60552 -12.47503 -12.24975 -12.15165 -11.87997 -11.73597 -11.44474 -10.82967 -10.48494 -8.86714 -8.35350 -6.38810 0.72258 1.29260 1.31037 1.33104 1.42217 1.84544 2.29158 2.76449 3.00029 3.59620 3.97671 4.07463 4.25765 4.28064 4.58683 4.82155 4.87878 5.05400 5.14583 5.28130 5.38677 5.44992 5.65222 6.15940 6.34890 6.66902 6.79874 7.26143 7.50537 8.79363 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045195 B = 0.010542 C = 0.009883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.387088 B = 2655.376104 C = 2832.594348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 H 0.113 0.887 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.062 0.938 7 C 0.024 3.976 8 N -0.936 5.936 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.265 1.265 13 N -0.392 5.392 14 N -0.141 5.141 15 N -0.252 5.252 16 C -0.156 4.156 17 C 0.335 3.665 18 N -0.823 5.823 19 H 0.066 0.934 20 H 0.080 0.920 21 H 0.051 0.949 22 H 0.011 0.989 23 H 0.014 0.986 24 H 0.268 0.732 25 H 0.212 0.788 26 H 0.434 0.566 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 3.285 13.658 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.068 3.932 3 H 0.131 0.869 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.080 0.920 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.190 1.190 13 N -0.187 5.187 14 N -0.119 5.119 15 N -0.119 5.119 16 C -0.322 4.322 17 C 0.098 3.902 18 N -0.377 5.377 19 H 0.085 0.915 20 H 0.099 0.901 21 H 0.070 0.930 22 H 0.029 0.971 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.228 0.772 26 H 0.269 0.731 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.017 1.897 13.028 13.507 hybrid contribution 0.933 0.641 -0.492 1.235 sum 3.951 2.539 12.537 13.387 Atomic orbital electron populations 1.21918 0.92495 1.02617 1.02661 1.21418 0.96337 0.95201 0.80201 0.86921 1.19712 0.95862 0.96328 0.92601 1.21126 1.35498 1.09382 0.89796 0.91998 1.25637 0.96434 0.99690 0.95756 1.69982 1.47983 1.40900 0.98720 0.85957 0.79656 0.80888 0.77900 1.19701 1.20372 1.18972 1.50966 1.38207 1.10797 1.18739 1.81981 1.25978 0.92925 1.11032 1.73989 1.06879 1.25519 1.05501 1.22892 1.14727 0.88588 1.05969 1.19152 0.91867 0.89528 0.89660 1.41489 1.59265 1.06051 1.30903 0.91477 0.90127 0.93025 0.97109 0.96715 0.92245 0.77156 0.73053 0.75866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.28 71.98 0.67 -4.20 15 2 C 0.17 6.26 3.16 44.99 0.14 6.40 15 3 H 0.11 3.61 6.99 -2.39 -0.02 3.59 15 4 C -0.01 -0.31 3.80 29.85 0.11 -0.19 15 5 C -0.52 -27.69 8.96 25.60 0.23 -27.46 15 6 H 0.06 3.43 7.30 -2.91 -0.02 3.41 15 7 C 0.02 1.33 5.47 84.66 0.46 1.80 15 8 N -0.94 -55.76 13.96 21.45 0.30 -55.46 15 9 Si 0.93 44.69 27.47 68.60 1.88 46.58 15 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 15 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 15 12 H -0.27 -12.56 6.54 99.48 0.65 -11.91 15 13 N -0.39 -14.03 3.33 -324.03 -1.08 -15.11 15 14 N -0.14 -5.79 13.70 37.02 0.51 -5.28 15 15 N -0.25 -9.38 12.32 -58.22 -0.72 -10.09 15 16 C -0.16 -4.45 11.90 83.92 1.00 -3.45 15 17 C 0.34 9.39 8.09 131.02 1.06 10.45 15 18 N -0.82 -14.32 9.11 -55.05 -0.50 -14.82 15 19 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 20 H 0.08 2.97 6.95 -2.39 -0.02 2.95 15 21 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 22 H 0.01 0.51 7.20 -2.39 -0.02 0.49 15 23 H 0.01 0.72 7.57 -2.39 -0.02 0.70 15 24 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 25 H 0.21 4.04 8.06 -2.91 -0.02 4.02 15 26 H 0.43 4.31 8.96 -92.71 -0.83 3.48 15 27 H 0.41 6.63 7.83 -92.71 -0.73 5.90 15 Total: -1.00 -68.09 236.75 3.65 -64.43 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -0.41 Total: 6.42 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 3.67 Total: -16.67 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -1.49 Total: -100.76 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -68.09 3.65 -64.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713460243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.117 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds