Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47236 * 2 1 4 4 H 1.08997 * 109.47382 * 305.00191 * 3 2 1 5 5 C 1.50702 * 109.47077 * 185.00086 * 3 2 1 6 6 H 1.08003 * 120.00198 * 239.99771 * 5 3 2 7 7 C 1.37875 * 120.00083 * 60.00234 * 5 3 2 8 8 N 1.31515 * 119.99868 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46972 * 90.00155 * 9 7 5 11 11 H 1.48502 * 109.47005 * 210.00028 * 9 7 5 12 12 H 1.48495 * 109.47322 * 329.99910 * 9 7 5 13 13 N 1.46506 * 109.47209 * 65.00400 * 3 2 1 14 14 N 1.40291 * 126.83953 * 60.03539 * 13 3 2 15 15 N 1.28741 * 108.18963 * 179.69497 * 14 13 3 16 16 C 1.33294 * 109.98472 * 0.45056 * 15 14 13 17 17 C 1.35869 * 108.85756 * 359.54228 * 16 15 14 18 18 N 1.39273 * 126.67994 * 180.26372 * 17 16 15 19 19 H 1.09004 * 109.47088 * 59.99310 * 1 2 3 20 20 H 1.09002 * 109.47418 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46730 * 300.00028 * 1 2 3 22 22 H 1.09004 * 109.46730 * 239.99972 * 2 1 3 23 23 H 1.09002 * 109.46836 * 120.00211 * 2 1 3 24 24 H 0.97001 * 120.00093 * 179.97438 * 8 7 5 25 25 H 1.08002 * 125.57504 * 179.81471 * 16 15 14 26 26 H 0.96998 * 119.99813 * 359.97438 * 18 17 16 27 27 H 0.97002 * 120.00112 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9223 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6525 2.0974 1.2519 14 7 2.0105 1.7075 2.5511 15 7 1.4804 2.5375 3.3802 16 6 0.7788 3.4574 2.7182 17 6 0.8733 3.2070 1.3861 18 7 0.2875 3.9416 0.3580 19 1 -0.3633 0.5140 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.8292 -0.0612 -2.9499 25 1 0.2290 4.2715 3.1670 26 1 -0.2527 4.7201 0.5650 27 1 0.4198 3.6746 -0.5652 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713466372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 64.418388 kcal Electronic energy + Delta-G solvation = -12596.675295 eV Core-core repulsion = 10390.464515 eV Total energy + Delta-G solvation = -2206.210781 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.53283 -37.36969 -35.70473 -34.02952 -32.29146 -29.59544 -29.04886 -25.55220 -23.66553 -22.31286 -21.32960 -18.75699 -18.21713 -17.35621 -16.69020 -16.38614 -16.06798 -15.26538 -14.78169 -14.16514 -13.88450 -13.29353 -12.97909 -12.78234 -12.44410 -12.35095 -12.19187 -12.05377 -11.83985 -11.74741 -11.38020 -10.62591 -10.18952 -8.73978 -8.29310 -6.43889 0.95425 1.37489 1.40721 1.48779 1.65924 1.97417 2.35448 2.94881 2.99828 4.06569 4.16162 4.37887 4.39944 4.53647 4.61265 4.92537 5.12618 5.17943 5.37686 5.47383 5.58241 5.63090 5.86725 6.05758 6.42959 6.67396 6.90554 7.25817 7.69625 8.74350 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038500 B = 0.012833 C = 0.011607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.093668 B = 2181.407838 C = 2411.821871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.290 3.710 4 H 0.056 0.944 5 C -0.549 4.549 6 H 0.042 0.958 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.270 1.270 12 H -0.279 1.279 13 N -0.365 5.365 14 N -0.140 5.140 15 N -0.265 5.265 16 C -0.163 4.163 17 C 0.321 3.679 18 N -0.827 5.827 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.030 0.970 22 H 0.093 0.907 23 H 0.030 0.970 24 H 0.272 0.728 25 H 0.208 0.792 26 H 0.431 0.569 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 5.405 -0.400 8.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.190 3.810 4 H 0.074 0.926 5 C -0.587 4.587 6 H 0.060 0.940 7 C -0.168 4.168 8 N -0.538 5.538 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.195 1.195 12 H -0.204 1.204 13 N -0.160 5.160 14 N -0.118 5.118 15 N -0.131 5.131 16 C -0.329 4.329 17 C 0.083 3.917 18 N -0.381 5.381 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.049 0.951 22 H 0.112 0.888 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.266 0.734 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.798 4.192 0.300 7.161 hybrid contribution 0.398 0.723 -1.117 1.389 sum -5.400 4.914 -0.817 7.347 Atomic orbital electron populations 1.21681 0.95818 1.01453 1.00210 1.21768 0.94765 0.97508 1.02124 1.19095 0.94947 0.90810 0.76136 0.92621 1.21326 0.91310 1.40059 1.06053 0.93992 1.25468 1.02729 0.93869 0.94717 1.69885 1.36708 1.37562 1.09691 0.85520 0.79862 0.78387 0.77676 1.20192 1.19457 1.20392 1.51082 1.35493 1.20240 1.09161 1.81912 1.24994 1.21317 0.83571 1.73967 1.07923 1.03145 1.28111 1.22816 1.14399 1.07494 0.88167 1.19202 0.92408 0.87963 0.92091 1.41367 1.58328 1.33208 1.05179 0.92355 0.92114 0.95113 0.88838 0.95152 0.91816 0.77522 0.73403 0.76361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.80 71.98 0.71 -4.38 15 2 C -0.12 -5.71 5.40 30.59 0.17 -5.55 15 3 C 0.29 13.94 2.51 44.24 0.11 14.05 15 4 H 0.06 2.63 6.99 -2.39 -0.02 2.61 15 5 C -0.55 -29.84 8.79 25.60 0.22 -29.62 15 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 15 7 C 0.03 1.78 5.29 84.65 0.45 2.22 15 8 N -0.90 -46.83 11.29 21.45 0.24 -46.59 15 9 Si 0.96 42.46 29.54 68.60 2.03 44.49 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 11 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 13 N -0.37 -16.55 2.77 -327.59 -0.91 -17.46 15 14 N -0.14 -6.90 13.69 37.02 0.51 -6.39 15 15 N -0.27 -11.72 12.32 -58.21 -0.72 -12.43 15 16 C -0.16 -5.82 11.90 83.92 1.00 -4.82 15 17 C 0.32 11.72 8.09 131.02 1.06 12.78 15 18 N -0.83 -21.15 9.11 -55.05 -0.50 -21.65 15 19 H 0.06 2.02 8.14 -2.38 -0.02 2.00 15 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.03 1.17 7.75 -2.39 -0.02 1.15 15 22 H 0.09 4.69 5.95 -2.39 -0.01 4.67 15 23 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.27 13.37 8.31 -92.71 -0.77 12.60 15 25 H 0.21 5.32 8.06 -2.91 -0.02 5.30 15 26 H 0.43 7.27 8.96 -92.71 -0.83 6.44 15 27 H 0.41 10.41 7.83 -92.71 -0.73 9.69 15 Total: -1.00 -62.76 237.91 4.00 -58.75 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.36 Total: 16.61 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.71 Total: -15.31 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -1.38 Total: -104.53 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -62.76 4.00 -58.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713466372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.173 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds