Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 C 1.35351 * 126.75328 * 85.00638 * 13 2 1 15 15 N 1.35316 * 106.17968 * 180.02562 * 14 13 2 16 16 C 1.46495 * 125.86893 * 180.02562 * 15 14 13 17 17 N 1.28712 * 108.26022 * 359.97438 * 15 14 13 18 18 N 1.28638 * 110.18194 * 359.72802 * 17 15 14 19 19 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 20 20 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 21 21 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 22 22 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 23 23 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 24 24 H 1.08004 * 126.90936 * 0.03235 * 14 13 2 25 25 H 1.08999 * 109.47508 * 89.99572 * 16 15 14 26 26 H 1.08996 * 109.47391 * 209.99988 * 16 15 14 27 27 H 1.09008 * 109.47284 * 329.99781 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.9191 -1.9403 3.4515 9 14 2.7773 0.2668 5.1216 10 1 1.4532 0.8035 5.5263 11 1 3.2816 -0.6527 6.1728 12 1 3.7337 1.3892 4.9460 13 6 2.0324 -0.7105 -1.2304 14 6 2.2134 -0.1725 -2.4591 15 7 2.6741 -1.1733 -3.2447 16 6 3.0149 -1.0619 -4.6652 17 7 2.7626 -2.2396 -2.5293 18 7 2.3929 -1.9956 -1.3216 19 1 -0.3633 0.5139 0.8898 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 2.2489 -1.6318 1.1527 23 1 3.2389 -2.3985 4.2445 24 1 2.0275 0.8499 -2.7533 25 1 4.0647 -0.7868 -4.7665 26 1 2.8411 -2.0191 -5.1567 27 1 2.3924 -0.2968 -5.1293 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720604213.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = 85.278620 kcal Electronic energy + Delta-G solvation = -12108.133279 eV Core-core repulsion = 9902.827066 eV Total energy + Delta-G solvation = -2205.306213 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.09065 -37.48062 -35.30282 -34.03261 -31.62967 -29.78902 -28.63178 -26.05788 -24.16896 -22.83041 -21.24890 -19.26431 -17.99787 -17.41755 -16.61282 -15.82430 -15.63850 -14.99734 -14.48431 -14.21531 -13.75093 -13.64058 -13.15714 -12.83535 -12.69112 -12.56311 -12.21913 -11.90422 -11.82521 -11.47475 -11.00564 -10.85371 -10.02477 -8.97787 -7.86336 -5.16842 0.74603 1.49374 1.54151 1.60097 1.65818 1.70929 2.61121 3.42646 3.53018 3.79327 4.12436 4.16045 4.39437 4.47762 4.52813 4.67039 4.76317 4.92853 5.02800 5.20495 5.31526 5.54817 5.58177 5.83285 6.33159 7.39041 7.64218 8.18177 8.41613 9.37788 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066666 B = 0.008361 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.905510 B = 3348.060788 C = 3529.656809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.245 3.755 3 H 0.078 0.922 4 N -0.738 5.738 5 C -0.240 4.240 6 H 0.087 0.913 7 C -0.083 4.083 8 N -0.975 5.975 9 Si 0.979 3.021 10 H -0.274 1.274 11 H -0.301 1.301 12 H -0.275 1.275 13 C -0.037 4.037 14 C -0.031 4.031 15 N -0.288 5.288 16 C 0.071 3.929 17 N -0.131 5.131 18 N -0.308 5.308 19 H 0.052 0.948 20 H 0.081 0.919 21 H 0.025 0.975 22 H 0.375 0.625 23 H 0.248 0.752 24 H 0.241 0.759 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 8.076 -17.516 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.135 3.865 3 H 0.095 0.905 4 N -0.378 5.378 5 C -0.371 4.371 6 H 0.105 0.895 7 C -0.275 4.275 8 N -0.626 5.626 9 Si 0.808 3.192 10 H -0.200 1.200 11 H -0.227 1.227 12 H -0.201 1.201 13 C -0.178 4.178 14 C -0.183 4.183 15 N -0.083 5.083 16 C -0.068 4.068 17 N -0.110 5.110 18 N -0.174 5.174 19 H 0.071 0.929 20 H 0.100 0.900 21 H 0.044 0.956 22 H 0.207 0.793 23 H 0.057 0.943 24 H 0.257 0.743 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.829 6.698 -17.455 18.785 hybrid contribution 0.076 0.610 0.994 1.169 sum -1.753 7.308 -16.461 18.096 Atomic orbital electron populations 1.22246 0.96258 1.00332 1.01762 1.18812 0.92964 0.94024 0.80712 0.90460 1.42648 1.78315 1.10771 1.06029 1.19724 1.35020 0.94497 0.87899 0.89526 1.25685 1.03109 0.96839 1.01867 1.69908 1.52756 1.10638 1.29274 0.85128 0.78117 0.77107 0.78883 1.19996 1.22734 1.20100 1.22710 1.05606 0.91655 0.97781 1.23874 1.05971 0.98317 0.90154 1.47717 1.40992 1.06500 1.13085 1.22736 1.04873 1.07252 0.71925 1.78184 1.22184 1.12133 0.98476 1.75026 1.15108 1.17219 1.10009 0.92933 0.90047 0.95553 0.79263 0.94295 0.74295 0.87703 0.87687 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.47 71.98 0.68 -4.62 15 2 C 0.25 10.21 3.37 44.24 0.15 10.36 15 3 H 0.08 2.92 8.08 -2.39 -0.02 2.90 15 4 N -0.74 -40.62 5.11 -326.49 -1.67 -42.29 15 5 C -0.24 -13.83 9.93 84.04 0.83 -12.99 15 6 H 0.09 4.58 7.83 -2.91 -0.02 4.56 15 7 C -0.08 -5.02 5.50 84.86 0.47 -4.56 15 8 N -0.97 -64.18 13.06 21.65 0.28 -63.90 15 9 Si 0.98 47.67 29.55 68.60 2.03 49.70 15 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 15 11 H -0.30 -14.93 7.11 99.48 0.71 -14.23 15 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 13 C -0.04 -1.44 6.18 41.59 0.26 -1.18 15 14 C -0.03 -0.81 11.55 83.49 0.96 0.15 15 15 N -0.29 -7.47 3.74 -369.23 -1.38 -8.86 15 16 C 0.07 0.78 11.39 127.77 1.46 2.24 15 17 N -0.13 -4.95 13.16 37.02 0.49 -4.47 15 18 N -0.31 -14.02 11.72 -48.60 -0.57 -14.59 15 19 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.38 23.37 7.25 -92.71 -0.67 22.70 15 23 H 0.25 15.83 8.31 -92.70 -0.77 15.06 15 24 H 0.24 3.34 8.06 -2.91 -0.02 3.32 15 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 15 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 15 27 H 0.14 0.43 8.14 -2.38 -0.02 0.41 15 Total: -1.00 -81.70 243.43 4.48 -77.21 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.50 Total: 17.79 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.81 Total: -10.60 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -2.85 Total: -134.10 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -81.70 4.48 -77.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720604213.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.493 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds