Wall clock time and date at job start Mon Mar 30 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48502 * 109.46968 * 270.00111 * 3 2 1 5 5 H 1.48494 * 109.47349 * 30.00453 * 3 2 1 6 6 H 1.48500 * 109.46889 * 150.00613 * 3 2 1 7 7 C 1.37875 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47371 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.44405 * 307.37606 * 10 9 7 12 12 C 1.54983 * 110.39806 * 185.00336 * 10 9 7 13 13 C 1.55219 * 101.07366 * 203.30246 * 12 10 9 14 14 H 1.09004 * 112.73460 * 154.44041 * 13 12 10 15 15 C 1.53833 * 108.46713 * 279.85354 * 13 12 10 16 16 C 1.54346 * 106.43833 * 105.29200 * 15 13 12 17 17 C 1.54918 * 103.77975 * 27.04804 * 16 15 13 18 18 C 1.55163 * 102.37905 * 32.94111 * 13 12 10 19 19 H 1.09004 * 111.56534 * 105.41183 * 18 13 12 20 20 O 1.43096 * 107.64757 * 342.09216 * 18 13 12 21 21 H 0.96991 * 119.99823 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47058 * 60.00720 * 9 7 2 23 23 H 1.08997 * 109.47653 * 300.00436 * 9 7 2 24 24 H 1.09002 * 111.10878 * 85.33843 * 12 10 9 25 25 H 1.08997 * 111.10581 * 321.26102 * 12 10 9 26 26 H 1.09002 * 110.06675 * 224.53959 * 15 13 12 27 27 H 1.09001 * 110.06224 * 345.99442 * 15 13 12 28 28 H 1.08999 * 110.56206 * 145.62032 * 16 15 13 29 29 H 1.08993 * 110.56785 * 268.32423 * 16 15 13 30 30 H 1.08992 * 110.73414 * 79.01769 * 17 16 15 31 31 H 1.08996 * 110.73075 * 202.15481 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9640 -3.5486 -0.8121 12 6 1.4965 -5.0130 -0.1272 13 6 2.5338 -5.9881 0.4912 14 1 2.0739 -6.8858 0.9044 15 6 3.5990 -6.3051 -0.5724 16 6 4.8638 -5.5158 -0.1726 17 6 4.7368 -5.3691 1.3643 18 6 3.2140 -5.1079 1.5730 19 1 2.8836 -5.3788 2.5758 20 8 2.9262 -3.7407 1.2637 21 1 -0.4849 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 1.3018 -5.2575 -1.1715 25 1 0.5722 -5.0051 0.4505 26 1 3.8124 -7.3740 -0.5810 27 1 3.2528 -5.9854 -1.5552 28 1 5.7623 -6.0763 -0.4308 29 1 4.8726 -4.5377 -0.6534 30 1 5.0348 -6.2898 1.8658 31 1 5.3296 -4.5272 1.7218 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720878650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:39 Heat of formation + Delta-G solvation = -87.169954 kcal Electronic energy + Delta-G solvation = -12823.130417 eV Core-core repulsion = 10681.593865 eV Total energy + Delta-G solvation = -2141.536552 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24461 -36.24342 -35.01986 -33.14111 -30.90072 -28.61292 -27.32090 -24.55280 -21.89631 -21.36305 -20.75388 -18.55686 -17.63290 -16.72784 -16.35178 -15.66349 -15.42634 -14.65086 -14.41287 -13.91835 -13.49924 -13.41731 -12.94787 -12.59624 -12.39611 -12.27719 -12.15736 -11.89267 -11.68857 -11.61424 -11.54628 -11.37799 -10.85669 -10.58970 -10.14673 -8.20644 -6.29789 1.36920 1.39258 1.50912 2.40506 3.01404 3.15788 3.53014 3.67543 3.93997 4.19646 4.25392 4.29527 4.44967 4.58185 4.74408 4.77912 4.85017 4.95531 4.98537 5.07516 5.10554 5.15407 5.24133 5.33405 5.44165 5.47771 5.63803 5.78398 6.20638 6.51523 6.83041 7.37448 8.91316 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.054986 B = 0.009537 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.099970 B = 2935.091958 C = 3167.117860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.026 3.974 10 C 0.098 3.902 11 H 0.050 0.950 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.116 0.884 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.133 4.133 18 C 0.054 3.946 19 H 0.093 0.907 20 O -0.394 6.394 21 H 0.264 0.736 22 H 0.012 0.988 23 H -0.008 1.008 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -13.402 -0.031 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.069 0.931 9 C -0.011 4.011 10 C 0.041 3.959 11 H 0.068 0.932 12 C -0.184 4.184 13 C -0.133 4.133 14 H 0.134 0.866 15 C -0.151 4.151 16 C -0.164 4.164 17 C -0.171 4.171 18 C -0.003 4.003 19 H 0.111 0.889 20 O -0.315 6.315 21 H 0.073 0.927 22 H 0.030 0.970 23 H 0.010 0.990 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.378 -13.116 0.084 15.049 hybrid contribution -0.066 1.119 -0.058 1.123 sum 7.312 -11.997 0.026 14.050 Atomic orbital electron populations 1.70080 1.07598 1.27740 1.51997 1.25947 0.95839 1.03219 0.94867 0.85460 0.78510 0.78521 0.78648 1.19315 1.20408 1.19423 1.21516 0.93082 0.92312 1.49945 0.93149 1.19123 0.93795 0.92870 0.95291 1.22972 0.92671 0.95180 0.85065 0.93229 1.23446 0.98544 0.94218 1.02171 1.23287 0.95878 0.98432 0.95732 0.86574 1.22229 0.93921 1.01283 0.97659 1.22392 0.98786 0.99673 0.95531 1.23067 0.95083 1.02050 0.96888 1.23969 0.95746 0.81863 0.98746 0.88897 1.88501 1.78061 1.25957 1.38933 0.92727 0.97012 0.98990 0.89182 0.91734 0.88958 0.91851 0.89410 0.94041 0.88242 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 46.55 29.54 68.60 2.03 48.57 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.53 -32.30 9.01 25.60 0.23 -32.07 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.03 1.47 4.72 29.85 0.14 1.61 16 10 C 0.10 4.39 2.71 31.27 0.08 4.47 16 11 H 0.05 2.24 7.14 -2.39 -0.02 2.23 16 12 C -0.15 -5.01 5.90 32.03 0.19 -4.82 16 13 C -0.11 -3.08 4.09 -9.01 -0.04 -3.12 16 14 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 15 C -0.11 -2.62 6.06 31.33 0.19 -2.43 16 16 C -0.13 -3.20 6.38 31.71 0.20 -3.00 16 17 C -0.13 -3.53 6.58 32.26 0.21 -3.32 16 18 C 0.05 1.75 4.54 32.34 0.15 1.89 16 19 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 20 O -0.39 -17.80 10.54 -148.98 -1.57 -19.37 16 21 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 22 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H 0.09 2.75 7.63 -2.39 -0.02 2.73 16 25 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.53 7.35 -2.39 -0.02 1.51 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.28 7.27 -2.39 -0.02 1.26 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -69.24 248.76 3.65 -65.60 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.08 Total: 3.99 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 1.82 Total: -40.40 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.28 Total: -58.39 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.57 Total: -19.37 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -69.24 3.65 -65.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720878650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.571 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds