Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47440 * 2 1 4 4 H 1.09007 * 109.40730 * 304.86293 * 3 2 1 5 5 C 1.53005 * 109.39442 * 64.45069 * 3 2 1 6 6 C 1.53232 * 109.37855 * 183.51426 * 5 3 2 7 7 C 1.51270 * 108.69741 * 305.66359 * 6 5 3 8 8 O 1.20752 * 120.85299 * 231.23272 * 7 6 5 9 9 C 1.51271 * 118.29945 * 51.25119 * 7 6 5 10 10 C 1.52953 * 109.41739 * 185.00310 * 3 2 1 11 11 H 1.08997 * 109.48509 * 56.31005 * 10 3 2 12 12 C 1.50707 * 109.49322 * 296.27930 * 10 3 2 13 13 H 1.08003 * 119.99519 * 0.05955 * 12 10 3 14 14 C 1.37869 * 120.00139 * 180.02562 * 12 10 3 15 15 N 1.31513 * 120.00093 * 180.02562 * 14 12 10 16 16 Si 1.86802 * 120.00070 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46902 * 90.00281 * 16 14 12 18 18 H 1.48500 * 109.47231 * 210.00329 * 16 14 12 19 19 H 1.48505 * 109.47103 * 330.00173 * 16 14 12 20 20 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47046 * 300.00047 * 1 2 3 22 22 H 1.08998 * 109.47421 * 60.00141 * 1 2 3 23 23 H 1.09001 * 109.47046 * 239.99953 * 2 1 3 24 24 H 1.08998 * 109.47421 * 119.99859 * 2 1 3 25 25 H 1.09003 * 109.33509 * 63.64188 * 5 3 2 26 26 H 1.08998 * 109.65336 * 303.58633 * 5 3 2 27 27 H 1.09002 * 109.62686 * 185.85253 * 6 5 3 28 28 H 1.09001 * 109.62522 * 65.47590 * 6 5 3 29 29 H 1.08996 * 109.62720 * 68.36253 * 9 7 6 30 30 H 1.08991 * 109.62768 * 188.93933 * 9 7 6 31 31 H 0.97000 * 119.99829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9799 -0.8436 5 6 1.6226 2.1290 1.3021 6 6 2.0570 3.5980 1.2643 7 6 3.5399 3.6578 0.9712 8 8 4.2835 4.3042 1.6692 9 6 4.0673 2.8873 -0.2189 10 6 3.5644 1.4428 -0.1258 11 1 3.8552 0.8980 -1.0239 12 6 4.1690 0.7772 1.0836 13 1 3.5295 0.3914 1.8638 14 6 5.5382 0.6601 1.1937 15 7 6.0658 0.0787 2.2489 16 14 6.6442 1.3259 -0.1565 17 1 6.9905 2.7393 0.1394 18 1 7.8867 0.5154 -0.2233 19 1 5.9346 1.2523 -1.4589 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.1028 1.6295 2.1435 26 1 0.5400 2.0729 1.4154 27 1 1.8554 4.0644 2.2287 28 1 1.5078 4.1222 0.4822 29 1 3.7039 3.3427 -1.1401 30 1 5.1571 2.8969 -0.2076 31 1 7.0292 -0.0033 2.3265 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725356310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -60.169953 kcal Electronic energy + Delta-G solvation = -13151.152463 eV Core-core repulsion = 11010.786719 eV Total energy + Delta-G solvation = -2140.365744 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25561 -36.72529 -32.90300 -31.83869 -30.50858 -27.27443 -24.95602 -22.92565 -21.27601 -19.54188 -18.58508 -16.26390 -15.23620 -14.60851 -14.50524 -14.17374 -13.64952 -13.57273 -13.10655 -12.35246 -12.24502 -11.88973 -11.61050 -11.52439 -11.21447 -10.71177 -10.57287 -10.32897 -10.08622 -9.85416 -9.70148 -9.27362 -8.90057 -8.54499 -8.43812 -6.07886 -4.08130 2.86872 3.30682 3.35077 3.39334 4.40787 4.94593 5.22131 5.37813 5.47819 5.58430 5.71085 5.75117 5.89700 6.00310 6.11562 6.18162 6.27715 6.32077 6.38691 6.41706 6.66564 6.74095 6.83752 6.94618 6.97468 7.17930 7.31917 7.74608 8.37619 8.49651 8.95482 9.54797 11.04757 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.017254 C = 0.013531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.170804 B = 1622.416698 C = 2068.763235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.070 4.070 4 H 0.049 0.951 5 C -0.104 4.104 6 C -0.163 4.163 7 C 0.387 3.613 8 O -0.477 6.477 9 C -0.176 4.176 10 C 0.022 3.978 11 H 0.038 0.962 12 C -0.517 4.517 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.895 5.895 16 Si 0.874 3.126 17 H -0.274 1.274 18 H -0.295 1.295 19 H -0.264 1.264 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.229 2.940 -5.848 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.141 4.141 6 C -0.201 4.201 7 C 0.264 3.736 8 O -0.352 6.352 9 C -0.214 4.214 10 C 0.003 3.997 11 H 0.056 0.944 12 C -0.555 4.555 13 H 0.099 0.901 14 C -0.128 4.128 15 N -0.533 5.533 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.223 1.223 19 H -0.189 1.189 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.670 3.214 -5.383 10.699 hybrid contribution 0.790 0.331 -0.687 1.097 sum -7.881 3.545 -6.069 10.560 Atomic orbital electron populations 1.21881 0.97531 1.00552 1.01033 1.21450 0.93475 0.97034 1.02835 1.21016 0.96737 0.95197 0.95927 0.93241 1.21597 0.99427 0.92803 1.00310 1.22213 0.95671 0.99607 1.02600 1.24559 0.90299 0.74955 0.83804 1.90308 1.61255 1.36010 1.47593 1.22787 1.01728 1.00418 0.96448 1.19215 0.91877 0.89670 0.98977 0.94383 1.21025 0.91942 1.37969 1.04544 0.90059 1.25013 0.98218 0.94430 0.95140 1.69875 1.11836 1.43371 1.28178 0.87037 0.80361 0.78813 0.83386 1.20102 1.22274 1.18919 0.93645 0.92895 0.93614 0.92624 0.90726 0.89934 0.92409 0.90568 0.89844 0.91058 0.91127 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.66 37.16 0.36 -1.69 16 2 C -0.11 -1.86 5.11 -26.73 -0.14 -1.99 16 3 C -0.07 -1.25 1.83 -90.64 -0.17 -1.42 16 4 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.10 -1.79 4.84 -26.61 -0.13 -1.92 16 6 C -0.16 -2.78 6.16 -27.48 -0.17 -2.95 16 7 C 0.39 8.37 6.17 -28.48 -0.18 8.20 16 8 O -0.48 -12.00 17.89 6.01 0.11 -11.90 16 9 C -0.18 -3.78 5.14 -27.48 -0.14 -3.92 16 10 C 0.02 0.47 1.67 -91.67 -0.15 0.32 16 11 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 12 C -0.52 -13.73 7.19 -34.44 -0.25 -13.97 16 13 H 0.08 2.30 5.96 -52.48 -0.31 1.99 16 14 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 16 Si 0.87 22.02 24.42 -169.99 -4.15 17.87 16 17 H -0.27 -7.05 6.82 56.52 0.39 -6.66 16 18 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.68 6.47 -51.93 -0.34 0.35 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.42 7.01 -51.93 -0.36 1.06 16 25 H 0.08 1.67 6.33 -51.93 -0.33 1.34 16 26 H 0.06 0.83 6.39 -51.93 -0.33 0.50 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.69 3.24 -51.93 -0.17 1.52 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 237.85 15.07 3.58 3.58 Total: -1.00 -30.71 237.85 -5.10 -35.81 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.36 Total: -1.42 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.06 Total: -17.32 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.63 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.11 Total: -11.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.71 -5.10 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725356310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.363 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds