Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47440 * 2 1 4 4 H 1.09007 * 109.40730 * 304.86293 * 3 2 1 5 5 C 1.53005 * 109.39442 * 64.45069 * 3 2 1 6 6 C 1.53232 * 109.37855 * 183.51426 * 5 3 2 7 7 C 1.51270 * 108.69741 * 305.66359 * 6 5 3 8 8 O 1.20752 * 120.85299 * 231.23272 * 7 6 5 9 9 C 1.51271 * 118.29945 * 51.25119 * 7 6 5 10 10 C 1.52953 * 109.41739 * 185.00310 * 3 2 1 11 11 H 1.08997 * 109.48509 * 56.31005 * 10 3 2 12 12 C 1.50707 * 109.49322 * 296.27930 * 10 3 2 13 13 H 1.08003 * 119.99519 * 0.05955 * 12 10 3 14 14 C 1.37869 * 120.00139 * 180.02562 * 12 10 3 15 15 N 1.31513 * 120.00093 * 180.02562 * 14 12 10 16 16 Si 1.86802 * 120.00070 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46902 * 90.00281 * 16 14 12 18 18 H 1.48500 * 109.47231 * 210.00329 * 16 14 12 19 19 H 1.48505 * 109.47103 * 330.00173 * 16 14 12 20 20 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47046 * 300.00047 * 1 2 3 22 22 H 1.08998 * 109.47421 * 60.00141 * 1 2 3 23 23 H 1.09001 * 109.47046 * 239.99953 * 2 1 3 24 24 H 1.08998 * 109.47421 * 119.99859 * 2 1 3 25 25 H 1.09003 * 109.33509 * 63.64188 * 5 3 2 26 26 H 1.08998 * 109.65336 * 303.58633 * 5 3 2 27 27 H 1.09002 * 109.62686 * 185.85253 * 6 5 3 28 28 H 1.09001 * 109.62522 * 65.47590 * 6 5 3 29 29 H 1.08996 * 109.62720 * 68.36253 * 9 7 6 30 30 H 1.08991 * 109.62768 * 188.93933 * 9 7 6 31 31 H 0.97000 * 119.99829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9799 -0.8436 5 6 1.6226 2.1290 1.3021 6 6 2.0570 3.5980 1.2643 7 6 3.5399 3.6578 0.9712 8 8 4.2835 4.3042 1.6692 9 6 4.0673 2.8873 -0.2189 10 6 3.5644 1.4428 -0.1258 11 1 3.8552 0.8980 -1.0239 12 6 4.1690 0.7772 1.0836 13 1 3.5295 0.3914 1.8638 14 6 5.5382 0.6601 1.1937 15 7 6.0658 0.0787 2.2489 16 14 6.6442 1.3259 -0.1565 17 1 6.9905 2.7393 0.1394 18 1 7.8867 0.5154 -0.2233 19 1 5.9346 1.2523 -1.4589 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.1028 1.6295 2.1435 26 1 0.5400 2.0729 1.4154 27 1 1.8554 4.0644 2.2287 28 1 1.5078 4.1222 0.4822 29 1 3.7039 3.3427 -1.1401 30 1 5.1571 2.8969 -0.2076 31 1 7.0292 -0.0033 2.3265 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725356310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = -80.585893 kcal Electronic energy + Delta-G solvation = -13152.037765 eV Core-core repulsion = 11010.786719 eV Total energy + Delta-G solvation = -2141.251046 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.90947 -38.36768 -34.79111 -33.37264 -32.19143 -28.76623 -26.85542 -24.31791 -22.86108 -21.06965 -20.36257 -18.15561 -16.95678 -16.42121 -16.18744 -15.77635 -15.35969 -15.05346 -14.51775 -14.14729 -13.93557 -13.52765 -13.11109 -12.99207 -12.63921 -12.32931 -12.27682 -11.91851 -11.64532 -11.59800 -11.12336 -11.01628 -10.68598 -10.64930 -10.09336 -8.27997 -6.28834 1.19960 1.28490 1.29888 1.38907 2.31243 3.08730 3.40924 3.89020 4.12731 4.15043 4.38084 4.49815 4.52273 4.63470 4.67485 4.80624 4.91349 5.01163 5.03684 5.10178 5.27885 5.38251 5.44769 5.49062 5.54690 5.61057 5.77091 5.87945 6.36913 6.72890 6.80685 7.36574 8.88244 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.017254 C = 0.013531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.170804 B = 1622.416698 C = 2068.763235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.068 4.068 4 H 0.092 0.908 5 C -0.100 4.100 6 C -0.154 4.154 7 C 0.376 3.624 8 O -0.526 6.526 9 C -0.183 4.183 10 C 0.017 3.983 11 H 0.043 0.957 12 C -0.498 4.498 13 H 0.048 0.952 14 C 0.008 3.992 15 N -0.951 5.951 16 Si 0.928 3.072 17 H -0.287 1.287 18 H -0.301 1.301 19 H -0.227 1.227 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.042 0.958 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 4.075 -8.442 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.087 4.087 4 H 0.110 0.890 5 C -0.137 4.137 6 C -0.192 4.192 7 C 0.257 3.743 8 O -0.405 6.405 9 C -0.220 4.220 10 C -0.002 4.002 11 H 0.061 0.939 12 C -0.536 4.536 13 H 0.067 0.933 14 C -0.189 4.189 15 N -0.592 5.592 16 Si 0.756 3.244 17 H -0.215 1.215 18 H -0.229 1.229 19 H -0.150 1.150 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.061 0.939 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.329 4.340 -8.015 14.540 hybrid contribution 1.524 -0.055 0.159 1.533 sum -9.804 4.285 -7.856 13.274 Atomic orbital electron populations 1.21803 0.94320 1.01637 1.02416 1.21408 0.96280 0.96165 1.00973 1.21054 0.93582 0.96333 0.97691 0.88962 1.21566 1.01421 0.92333 0.98402 1.22247 0.92369 0.99895 1.04660 1.25314 0.92505 0.73536 0.82983 1.90300 1.62927 1.38308 1.48930 1.22838 1.00182 1.00100 0.98931 1.19270 0.94978 0.89561 0.96387 0.93915 1.21407 0.91227 1.35817 1.05173 0.93344 1.25854 1.00258 0.95481 0.97266 1.70036 1.11795 1.46576 1.30821 0.86147 0.78649 0.76997 0.82571 1.21453 1.22950 1.15034 0.92942 0.92288 0.91275 0.92697 0.94532 0.94367 0.88449 0.90167 0.84877 0.86005 0.93938 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.66 71.98 0.70 -2.58 16 2 C -0.11 -3.45 5.11 30.59 0.16 -3.29 16 3 C -0.07 -2.17 1.83 -10.81 -0.02 -2.19 16 4 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 5 C -0.10 -3.13 4.84 30.67 0.15 -2.98 16 6 C -0.15 -4.67 6.16 30.11 0.19 -4.49 16 7 C 0.38 15.58 6.17 29.46 0.18 15.76 16 8 O -0.53 -26.55 17.89 -1.43 -0.03 -26.58 16 9 C -0.18 -7.32 5.14 30.11 0.15 -7.16 16 10 C 0.02 0.70 1.67 -11.48 -0.02 0.68 16 11 H 0.04 1.76 7.20 -2.39 -0.02 1.75 16 12 C -0.50 -26.93 7.19 25.60 0.18 -26.75 16 13 H 0.05 2.88 5.96 -2.91 -0.02 2.87 16 14 C 0.01 0.46 5.45 84.65 0.46 0.92 16 15 N -0.95 -61.14 13.96 21.44 0.30 -60.84 16 16 Si 0.93 46.07 24.42 68.60 1.67 47.75 16 17 H -0.29 -14.70 6.82 99.48 0.68 -14.02 16 18 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 19 H -0.23 -9.79 6.53 99.48 0.65 -9.14 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 1.26 6.47 -2.39 -0.02 1.25 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.04 1.39 7.01 -2.39 -0.02 1.37 16 25 H 0.04 1.53 6.33 -2.39 -0.02 1.52 16 26 H 0.10 2.33 6.39 -2.39 -0.02 2.31 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.04 1.96 3.24 -2.39 -0.01 1.95 16 31 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -71.12 237.85 5.10 -66.02 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.02 Total: 5.73 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 2.13 Total: -32.07 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.30 Total: -60.84 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.03 Total: -26.58 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.75 kcal Total: -71.12 5.10 -66.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725356310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.567 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds