Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 H 1.09007 * 109.40884 * 55.14457 * 3 2 1 5 5 C 1.52954 * 109.41744 * 295.35721 * 3 2 1 6 6 C 1.53227 * 109.40607 * 176.29570 * 5 3 2 7 7 C 1.51267 * 108.53612 * 54.62299 * 6 5 3 8 8 O 1.20763 * 120.84601 * 128.63951 * 7 6 5 9 9 C 1.51266 * 118.31302 * 308.66313 * 7 6 5 10 10 C 1.52957 * 109.41184 * 175.00051 * 3 2 1 11 11 H 1.08993 * 109.48389 * 63.71389 * 10 3 2 12 12 C 1.50699 * 109.48106 * 303.68560 * 10 3 2 13 13 H 1.07999 * 120.00803 * 0.02932 * 12 10 3 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 10 3 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.08993 * 109.46959 * 59.99654 * 1 2 3 21 21 H 1.09001 * 109.46591 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46490 * 299.99641 * 1 2 3 23 23 H 1.08997 * 109.46714 * 240.00720 * 2 1 3 24 24 H 1.08993 * 109.46959 * 120.00346 * 2 1 3 25 25 H 1.09002 * 109.48261 * 296.27254 * 5 3 2 26 26 H 1.09003 * 109.48566 * 56.31491 * 5 3 2 27 27 H 1.09002 * 109.62985 * 174.33924 * 6 5 3 28 28 H 1.09005 * 109.62694 * 294.71949 * 6 5 3 29 29 H 1.08995 * 109.61599 * 291.61850 * 9 7 6 30 30 H 1.08999 * 109.63697 * 171.04509 * 9 7 6 31 31 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9799 0.8437 5 6 1.6271 2.1279 -1.3036 6 6 2.0570 3.5980 -1.2642 7 6 3.5398 3.6578 -0.9711 8 8 4.2835 4.3039 -1.6696 9 6 4.0676 2.8872 0.2188 10 6 3.5645 1.4428 0.1257 11 1 4.0015 0.9613 -0.7490 12 6 3.9665 0.6896 1.3675 13 1 3.2102 0.2537 2.0034 14 6 5.3000 0.5568 1.6919 15 7 5.6509 -0.1009 2.7754 16 14 6.6082 1.3112 0.5925 17 1 6.8929 2.6978 1.0416 18 1 6.1221 1.3354 -0.8105 19 1 7.8497 0.5004 0.6723 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.1100 1.6303 -2.1447 26 1 0.5448 2.0686 -1.4185 27 1 1.8554 4.0645 -2.2285 28 1 1.5052 4.1201 -0.4825 29 1 3.7045 3.3427 1.1400 30 1 5.1575 2.8967 0.2072 31 1 6.5890 -0.1940 3.0038 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725356312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -63.423071 kcal Electronic energy + Delta-G solvation = -12964.718996 eV Core-core repulsion = 10824.212186 eV Total energy + Delta-G solvation = -2140.506810 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42486 -36.89646 -33.03300 -32.04980 -30.64328 -27.33024 -25.04241 -23.06468 -21.09306 -19.53224 -18.57395 -16.85086 -15.57576 -14.84663 -14.51681 -14.04507 -13.72286 -13.53500 -13.23956 -12.84111 -12.53246 -11.76860 -11.62027 -11.49413 -11.16170 -10.85622 -10.60001 -10.29556 -10.16247 -9.89490 -9.71408 -9.62571 -9.06056 -8.61618 -8.51044 -6.13384 -4.13104 2.48664 3.26408 3.37628 3.41335 4.36541 4.69015 5.15974 5.22790 5.30810 5.40179 5.64692 5.68753 5.85906 5.90838 6.01535 6.11720 6.15703 6.25893 6.36930 6.40075 6.53087 6.61555 6.73516 6.86969 7.00489 7.15589 7.38729 7.67982 8.03571 8.45012 8.90889 9.49133 10.98892 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.017751 C = 0.011596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.497150 B = 1576.980053 C = 2413.977533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.073 4.073 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.167 4.167 7 C 0.359 3.641 8 O -0.483 6.483 9 C -0.173 4.173 10 C 0.026 3.974 11 H 0.031 0.969 12 C -0.511 4.511 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.265 1.265 19 H -0.294 1.294 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 3.326 -5.671 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.092 4.092 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.205 4.205 7 C 0.237 3.763 8 O -0.359 6.359 9 C -0.211 4.211 10 C 0.007 3.993 11 H 0.049 0.951 12 C -0.548 4.548 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.190 1.190 19 H -0.222 1.222 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.860 3.590 -5.924 10.477 hybrid contribution 0.865 0.438 -0.422 1.058 sum -6.995 4.028 -6.346 10.268 Atomic orbital electron populations 1.21880 0.97574 1.00569 1.00940 1.21519 0.93489 0.96909 1.03146 1.21083 0.97103 0.95554 0.95410 0.91418 1.21707 1.00746 0.92913 0.99643 1.22280 0.95563 0.99521 1.03093 1.25368 0.90773 0.75643 0.84474 1.90316 1.61525 1.35704 1.48351 1.22910 1.01458 0.99967 0.96767 1.19179 0.91720 0.89576 0.98815 0.95143 1.21012 0.93028 1.33562 1.07213 0.89921 1.25009 0.98534 0.94676 0.94680 1.69881 1.17346 1.41484 1.24715 0.87035 0.81475 0.78777 0.82174 1.20380 1.19045 1.22169 0.93434 0.93633 0.93170 0.92932 0.89877 0.92113 0.91374 0.90525 0.88809 0.88416 0.91301 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.92 5.19 -26.73 -0.14 -2.06 16 3 C -0.07 -1.29 1.63 -90.66 -0.15 -1.44 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C -0.11 -1.68 5.05 -26.64 -0.13 -1.81 16 6 C -0.17 -2.50 6.17 -27.49 -0.17 -2.67 16 7 C 0.36 6.99 6.72 -28.48 -0.19 6.80 16 8 O -0.48 -10.73 17.89 6.00 0.11 -10.63 16 9 C -0.17 -3.70 4.84 -27.49 -0.13 -3.84 16 10 C 0.03 0.57 1.28 -91.68 -0.12 0.46 16 11 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 12 C -0.51 -13.31 8.35 -34.44 -0.29 -13.60 16 13 H 0.08 2.29 6.71 -52.49 -0.35 1.94 16 14 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 15 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 16 Si 0.88 21.97 24.31 -169.99 -4.13 17.83 16 17 H -0.28 -6.88 6.92 56.52 0.39 -6.49 16 18 H -0.27 -6.58 6.53 56.52 0.37 -6.22 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H 0.05 0.58 6.47 -51.93 -0.34 0.24 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 1.62 6.22 -51.93 -0.32 1.30 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.85 6.38 -51.93 -0.33 0.52 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.07 1.63 3.46 -51.93 -0.18 1.45 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 240.94 15.07 3.63 3.63 Total: -1.00 -29.50 240.94 -5.13 -34.64 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.46 Total: -1.76 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.06 Total: -17.94 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.11 Total: -10.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.13 Total: 17.83 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.50 -5.13 -34.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725356312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.786 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds