Wall clock time and date at job start Mon Mar 30 2020 02:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 H 1.09007 * 109.40884 * 55.14457 * 3 2 1 5 5 C 1.52954 * 109.41744 * 295.35721 * 3 2 1 6 6 C 1.53227 * 109.40607 * 176.29570 * 5 3 2 7 7 C 1.51267 * 108.53612 * 54.62299 * 6 5 3 8 8 O 1.20763 * 120.84601 * 128.63951 * 7 6 5 9 9 C 1.51266 * 118.31302 * 308.66313 * 7 6 5 10 10 C 1.52957 * 109.41184 * 175.00051 * 3 2 1 11 11 H 1.08993 * 109.48389 * 63.71389 * 10 3 2 12 12 C 1.50699 * 109.48106 * 303.68560 * 10 3 2 13 13 H 1.07999 * 120.00803 * 0.02932 * 12 10 3 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 10 3 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.08993 * 109.46959 * 59.99654 * 1 2 3 21 21 H 1.09001 * 109.46591 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46490 * 299.99641 * 1 2 3 23 23 H 1.08997 * 109.46714 * 240.00720 * 2 1 3 24 24 H 1.08993 * 109.46959 * 120.00346 * 2 1 3 25 25 H 1.09002 * 109.48261 * 296.27254 * 5 3 2 26 26 H 1.09003 * 109.48566 * 56.31491 * 5 3 2 27 27 H 1.09002 * 109.62985 * 174.33924 * 6 5 3 28 28 H 1.09005 * 109.62694 * 294.71949 * 6 5 3 29 29 H 1.08995 * 109.61599 * 291.61850 * 9 7 6 30 30 H 1.08999 * 109.63697 * 171.04509 * 9 7 6 31 31 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9799 0.8437 5 6 1.6271 2.1279 -1.3036 6 6 2.0570 3.5980 -1.2642 7 6 3.5398 3.6578 -0.9711 8 8 4.2835 4.3039 -1.6696 9 6 4.0676 2.8872 0.2188 10 6 3.5645 1.4428 0.1257 11 1 4.0015 0.9613 -0.7490 12 6 3.9665 0.6896 1.3675 13 1 3.2102 0.2537 2.0034 14 6 5.3000 0.5568 1.6919 15 7 5.6509 -0.1009 2.7754 16 14 6.6082 1.3112 0.5925 17 1 6.8929 2.6978 1.0416 18 1 6.1221 1.3354 -0.8105 19 1 7.8497 0.5004 0.6723 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.1100 1.6303 -2.1447 26 1 0.5448 2.0686 -1.4185 27 1 1.8554 4.0645 -2.2285 28 1 1.5052 4.1201 -0.4825 29 1 3.7045 3.3427 1.1400 30 1 5.1575 2.8967 0.2072 31 1 6.5890 -0.1940 3.0038 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725356312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:21 Heat of formation + Delta-G solvation = -82.044539 kcal Electronic energy + Delta-G solvation = -12965.526483 eV Core-core repulsion = 10824.212186 eV Total energy + Delta-G solvation = -2141.314297 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97189 -38.44338 -34.93516 -33.46090 -32.33131 -28.77844 -26.86990 -24.37915 -22.72020 -21.03074 -20.05767 -18.89147 -17.26831 -16.37549 -15.95505 -15.87684 -15.33850 -15.11542 -14.59358 -14.46159 -14.19168 -13.23276 -13.12130 -12.93859 -12.71501 -12.34464 -12.19290 -12.08195 -11.74887 -11.59374 -11.23882 -11.11284 -10.87231 -10.67000 -10.14217 -8.31497 -6.31379 0.95905 1.22935 1.30673 1.36758 2.26072 3.03424 3.26145 3.86933 3.98822 4.07302 4.30849 4.43629 4.51047 4.57999 4.65562 4.78660 4.83523 4.97354 5.04480 5.08809 5.24105 5.27012 5.33949 5.47375 5.51755 5.61944 5.78538 5.82391 6.34789 6.51353 6.77490 7.33251 8.84479 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.017751 C = 0.011596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.497150 B = 1576.980053 C = 2413.977533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.071 4.071 4 H 0.074 0.926 5 C -0.105 4.105 6 C -0.155 4.155 7 C 0.363 3.637 8 O -0.514 6.514 9 C -0.180 4.180 10 C 0.025 3.975 11 H 0.016 0.984 12 C -0.497 4.497 13 H 0.059 0.941 14 C 0.023 3.977 15 N -0.942 5.942 16 Si 0.925 3.075 17 H -0.275 1.275 18 H -0.264 1.264 19 H -0.296 1.296 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 4.534 -7.276 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.089 4.089 4 H 0.092 0.908 5 C -0.142 4.142 6 C -0.192 4.192 7 C 0.243 3.757 8 O -0.392 6.392 9 C -0.218 4.218 10 C 0.006 3.994 11 H 0.034 0.966 12 C -0.535 4.535 13 H 0.077 0.923 14 C -0.174 4.174 15 N -0.583 5.583 16 Si 0.755 3.245 17 H -0.202 1.202 18 H -0.189 1.189 19 H -0.224 1.224 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.097 4.801 -7.539 13.485 hybrid contribution 1.515 0.021 0.118 1.520 sum -8.582 4.823 -7.421 12.328 Atomic orbital electron populations 1.21803 0.94302 1.01675 1.02333 1.21457 0.96356 0.96097 1.01181 1.21053 0.93573 0.96555 0.97763 0.90793 1.21677 1.03075 0.92229 0.97230 1.22293 0.91489 1.00035 1.05416 1.25635 0.93079 0.74240 0.82722 1.90315 1.62956 1.37071 1.48855 1.22868 0.99973 1.00016 0.98954 1.19149 0.95242 0.89297 0.95759 0.96635 1.21344 0.92099 1.32237 1.07816 0.92339 1.25630 1.00564 0.95569 0.95679 1.69993 1.17633 1.43964 1.26706 0.86216 0.79455 0.78014 0.80828 1.20184 1.18865 1.22403 0.90937 0.92860 0.92735 0.93211 0.93636 0.92499 0.87446 0.88215 0.85730 0.87426 0.93962 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.67 71.99 0.70 -2.72 16 2 C -0.11 -3.68 5.19 30.60 0.16 -3.52 16 3 C -0.07 -2.34 1.63 -10.82 -0.02 -2.36 16 4 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 5 C -0.10 -2.64 5.05 30.65 0.15 -2.48 16 6 C -0.16 -3.89 6.17 30.10 0.19 -3.70 16 7 C 0.36 13.20 6.72 29.46 0.20 13.40 16 8 O -0.51 -21.87 17.89 -1.46 -0.03 -21.90 16 9 C -0.18 -7.51 4.84 30.10 0.15 -7.36 16 10 C 0.02 1.06 1.28 -11.48 -0.01 1.05 16 11 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 12 C -0.50 -26.41 8.35 25.60 0.21 -26.20 16 13 H 0.06 3.35 6.71 -2.91 -0.02 3.33 16 14 C 0.02 1.32 5.45 84.65 0.46 1.78 16 15 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 16 Si 0.93 46.43 24.31 68.60 1.67 48.10 16 17 H -0.28 -13.56 6.92 99.48 0.69 -12.88 16 18 H -0.26 -12.96 6.53 99.48 0.65 -12.31 16 19 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 20 H 0.07 1.37 6.47 -2.39 -0.02 1.36 16 21 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.80 6.22 -2.39 -0.01 1.78 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.11 1.97 6.38 -2.39 -0.02 1.96 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.04 1.98 3.46 -2.39 -0.01 1.97 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.37 240.94 5.15 -60.22 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.03 Total: 2.97 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 2.18 Total: -32.10 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.30 Total: -57.29 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.03 Total: -21.90 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -65.37 5.15 -60.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725356312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.829 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds